RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 BEND6Q5SZJ8 279 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 OTUD6AQ7L8S5 288 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 LINC00301Q8NCQ3 95 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 CALML6Q8TD86 181 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 RIOK1Q9BRS2 568 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 ABCC3O15438 1527 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 H3BRJ5 948 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 NDUFA10O95299 355 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 SFSWAPQ12872 951 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 TMED2Q15363 201 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 CCDC149Q6ZUS6 474 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 TRIM59Q8IWR1 403 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 NSUN7Q8NE18 718 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 GJD4Q96KN9 370 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 C6orf203Q9P0P8 240 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 COL3A1P02461 1466 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 CYP21A2P08686 494 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 CDC25AP30304 524 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 KRR1Q13601 381 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 PODNQ7Z5L7 613 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 IFNL3Q8IZI9 196 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 SDR42E1Q8WUS8 393 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 MAML1Q92585 1016 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 CATSPER2Q96P56 530 aa9.33□□□□□ -0.92
LIMCH1-218ENST00000513024 PPEF1O14829 653 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 TTI1O43156 1089 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 LARGE1O95461 756 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 MT-ND3P03897 115 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 GOLGA8HP0CJ92 632 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 SRGAP2BP0DMP2 458 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 CORO7P57737 925 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 HEATR4Q86WZ0 1026 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 LZTS2Q9BRK4 669 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 POLR3EQ9NVU0 708 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 MROH2AA6NES4 1674 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 ABCA9Q8IUA7 1624 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 ADCY9O60503 1353 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 MYO3BQ8WXR4 1341 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 A0A0G2JND7 137 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 LZTS3O60299 673 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 ZBTB7AO95365 584 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 DLATP10515 647 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 VCAM1P19320 739 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 NSMFQ6X4W1 530 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 TGFBRAP1Q8WUH2 860 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 MAN1B1Q9UKM7 699 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 KIF13AQ9H1H9 1805 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 WDR17Q8IZU2 1322 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 MYO1FO00160 1098 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 E2F6O75461 281 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 TMOD1P28289 359 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 SPARCL1Q14515 664 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 KRT81Q14533 505 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 CNGA3Q16281 694 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 MFSD14CQ5VZR4 134 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 FAM178BQ8IXR5 827 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 ZSCAN10Q96SZ4 725 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 AP1M1Q9BXS5 423 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 UNC45AQ9H3U1 944 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 SMYD3Q9H7B4 428 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 ADD3Q9UEY8 706 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 ZDHHC9Q9Y397 364 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 NFIBO00712 420 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 SASH1O94885 1247 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 EIF4A3P38919 411 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 SREBF2Q12772 1141 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 LRRC41Q15345 812 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 TTBK2Q6IQ55 1244 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 NEK8Q86SG6 692 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 CATSPER3Q86XQ3 398 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 PLD3Q8IV08 490 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 RAET1EQ8TD07 263 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 NAF1Q96HR8 494 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 SYTL2Q9HCH5 934 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 SMYD2Q9NRG4 433 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 TMEM51Q9NW97 253 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 DIP2BQ9P265 1576 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 LRRC7Q96NW7 1537 aa9.32□□□□□ -0.92
LIMCH1-218ENST00000513024 M0R3G1 203 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 GAS7O60861 476 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 KRT6AP02538 564 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 KRT6BP04259 564 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 KRT6CP48668 564 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 EIF2B2P49770 351 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 EPHB1P54762 984 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 SF3B3Q15393 1217 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 HADHQ16836 314 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 SLC26A7Q8TE54 656 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 DDX17Q92841 729 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 PDLIM2Q96JY6 352 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 PRPF18Q99633 342 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 PKD2L2Q9NZM6 624 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 KIDINS220Q9ULH0 1771 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 LOC102724428A0A0B4J2F2 783 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 GOLGA8RI6L899 631 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 SRGAP2O75044 1071 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 PPP6R2O75170 966 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 PYGLP06737 847 aa9.31□□□□□ -0.92
LIMCH1-218ENST00000513024 GJA8P48165 433 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms