RNA–Protein interactions for RNA: ENST00000509330.5

PHF3-209, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best) BASIC

Gene PHF3, Length 2,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-209ENST00000509330 CYFIP1Q7L576 1253 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 NIPA1Q7RTP0 329 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 ZNF526Q8TF50 670 aaPredicted RBP16.32■□□□□ 0.2
PHF3-209ENST00000509330 UBXN4Q92575 508 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 IFIH1Q9BYX4 1025 aaKnown RBP16.32■□□□□ 0.2
PHF3-209ENST00000509330 AJAP1Q9UKB5 411 aaPredicted RBP16.32■□□□□ 0.2
PHF3-209ENST00000509330 USP20Q9Y2K6 914 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 FHOD1Q9Y613 1164 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 GOLGA8IPA6NC78 632 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 SPDYE4A6NLX3 237 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 GOLGA8JA6NMD2 632 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 ZNF862O60290 1169 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 EXOC3O60645 756 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 PSMC5P62195 406 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 KRT83P78385 493 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 IRX3P78415 501 aaPredicted RBP16.32■□□□□ 0.2
PHF3-209ENST00000509330 BMT2Q1RMZ1 405 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 SLC35C1Q96A29 364 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 CDCA5Q96FF9 252 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 CEP170P1Q96L14 293 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 GCNT4Q9P109 453 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 ODF2LQ9ULJ1 636 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 ADAMTS5Q9UNA0 930 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 PGK2P07205 417 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 GUCY2CP25092 1073 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 ZNF131P52739 623 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 EXOC3L4Q17RC7 722 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 NOL9Q5SY16 702 aaKnown RBP16.32■□□□□ 0.2
PHF3-209ENST00000509330 SFMBT2Q5VUG0 894 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 FBXO38Q6PIJ6 1188 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 CCDC60Q8IWA6 550 aaPredicted RBP16.32■□□□□ 0.2
PHF3-209ENST00000509330 PSMB7Q99436 277 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 CBWD1Q9BRT8 395 aa16.32■□□□□ 0.2
PHF3-209ENST00000509330 RNF216Q9NWF9 866 aaPredicted RBP16.32■□□□□ 0.2
PHF3-209ENST00000509330 LARSQ9P2J5 1176 aaKnown RBP16.32■□□□□ 0.2
PHF3-209ENST00000509330 SEPT9Q9UHD8 586 aaPredicted RBP16.32■□□□□ 0.2
PHF3-209ENST00000509330 FDX1P10109 184 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 KCNA2P16389 499 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 FRMD5Q7Z6J6 570 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 TEX2Q8IWB9 1127 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 CAPZA3Q96KX2 299 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 INPP4AQ96PE3 977 aaPredicted RBP16.31■□□□□ 0.2
PHF3-209ENST00000509330 SPAG5Q96R06 1193 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 NAPGQ99747 312 aaPredicted RBP16.31■□□□□ 0.2
PHF3-209ENST00000509330 MOV10L1Q9BXT6 1211 aaKnown RBP16.31■□□□□ 0.2
PHF3-209ENST00000509330 JPH1Q9HDC5 661 aaPredicted RBP16.31■□□□□ 0.2
PHF3-209ENST00000509330 CEP72Q9P209 647 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 PCDHA10Q9Y5I2 948 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 LRRN2O75325 713 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 DNA2P51530 1060 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 MARSP56192 900 aaKnown RBP16.31■□□□□ 0.2
PHF3-209ENST00000509330 KRT76Q01546 638 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 ZC3H3Q8IXZ2 948 aaKnown RBP16.31■□□□□ 0.2
PHF3-209ENST00000509330 NEK9Q8TD19 979 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 MAP3K20Q9NYL2 800 aaKnown RBP16.31■□□□□ 0.2
PHF3-209ENST00000509330 FAM184BQ9ULE4 1060 aa16.31■□□□□ 0.2
PHF3-209ENST00000509330 RLFQ13129 1914 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 EIF3CLB5ME19 914 aaKnown RBP16.3■□□□□ 0.2
PHF3-209ENST00000509330 EIF3DO15371 548 aaKnown RBP eCLIP16.3■□□□□ 0.2
PHF3-209ENST00000509330 BUB1O43683 1085 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 ATP1A1P05023 1023 aaKnown RBP16.3■□□□□ 0.2
PHF3-209ENST00000509330 IREB2P48200 963 aaKnown RBP16.3■□□□□ 0.2
PHF3-209ENST00000509330 ELMO3Q96BJ8 720 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 EIF3CQ99613 913 aaKnown RBP16.3■□□□□ 0.2
PHF3-209ENST00000509330 HAUS4Q9H6D7 363 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 PCDHA13Q9Y5I0 950 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 DOCK5Q9H7D0 1870 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 TADA3O75528 432 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 POTEJP0CG39 1038 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 PON1P27169 355 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 PSMC2P35998 433 aaKnown RBP16.3■□□□□ 0.2
PHF3-209ENST00000509330 JAK3P52333 1124 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 NAP1L1P55209 391 aaKnown RBP16.3■□□□□ 0.2
PHF3-209ENST00000509330 DLG4P78352 724 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 KIF5AQ12840 1032 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 CBWD6Q4V339 395 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 CBWD3Q5JTY5 395 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 CBWD5Q5RIA9 395 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 HGSNATQ68CP4 663 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 FRMD4BQ9Y2L6 1034 aa16.3■□□□□ 0.2
PHF3-209ENST00000509330 KRT86O43790 486 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 MOCS3O95396 460 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 EPHX2P34913 555 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 OAZ1P54368 228 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 MTERF2Q49AM1 385 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 HAUS6Q7Z4H7 955 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 CCDC170Q8IYT3 715 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 RBM46Q8TBY0 533 aaKnown RBP16.29■□□□□ 0.2
PHF3-209ENST00000509330 FAM84AQ96KN4 292 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 GANQ9H2C0 597 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 ADAMTS1Q9UHI8 967 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 SBF1O95248 1867 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 UCHL3P15374 230 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 ACTR2P61160 394 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 DPY19L2Q6NUT2 758 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 FOXR2Q6PJQ5 311 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 GPRASP2Q96D09 838 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 TXNRD2Q9NNW7 524 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 SEL1LQ9UBV2 794 aa16.29■□□□□ 0.2
PHF3-209ENST00000509330 SLC9A2Q9UBY0 812 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms