RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	PRODH	O43272	600 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	EIF4EBP3	O60516	100 aa	Predicted RBP	5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	KATNA1	O75449	491 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	POU3F2	P20265	443 aa	Predicted RBP	5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	GYG1	P46976	350 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	KCNQ1	P51787	676 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	GUCY2F	P51841	1108 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	CACNB3	P54284	484 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	EPHB1	P54762	984 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	MRPS5	P82675	430 aa	Known RBP	5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	SMAD3	P84022	425 aa	Known RBP	5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	NHLH1	Q02575	133 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	PPIL2	Q13356	520 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	SLBP	Q14493	270 aa	Known RBP eCLIP	5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	SUZ12	Q15022	739 aa	Known RBP	5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	PCBP1	Q15365	356 aa	Known RBP eCLIP	5.24	□□□□□ -1.57	6e-16	■■■□□ 16.6
VPS52-222	ENST00000495981	CT47A1	Q5JQC4	288 aa	Predicted RBP	5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	DCAF15	Q66K64	600 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	SLC6A19	Q695T7	634 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	CNNM4	Q6P4Q7	775 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	SLCO4C1	Q6ZQN7	724 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	FGD2	Q7Z6J4	655 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	ERO1B	Q86YB8	467 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	GSTCD	Q8NEC7	633 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	RIN3	Q8TB24	985 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	BAHD1	Q8TBE0	780 aa	Predicted RBP	5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	PPP1R13L	Q8WUF5	828 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	SCLY	Q96I15	445 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	DHRS1	Q96LJ7	313 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	FGD4	Q96M96	766 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	USP26	Q9BXU7	913 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	PUS3	Q9BZE2	481 aa	Known RBP	5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	CD320	Q9NPF0	282 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	DISC1	Q9NRI5	854 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	GEMIN8	Q9NWZ8	242 aa	Known RBP	5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	CRIM1	Q9NZV1	1036 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	THEG	Q9P2T0	379 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	NXF1	Q9UBU9	619 aa	Known RBP	5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	DAGLA	Q9Y4D2	1042 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	MYH2	Q9UKX2	1941 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	CFAP47	Q6ZTR5	3102 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981		A0A0G2JMZ2	1700 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	TERT	O14746	1132 aa	Known RBP	5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	PRC1	O43663	620 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	MYO1B	O43795	1136 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	PEX10	O60683	326 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	DEAF1	O75398	565 aa	Predicted RBP	5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	NBPF7	P0C2Y1	421 aa	Predicted RBP	5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	SLURP2	P0DP57	97 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	EPX	P11678	715 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	FGFR2	P21802	821 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	CAP2	P40123	477 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	YARS	P54577	528 aa	Known RBP	5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	SUMO1	P63165	101 aa	Known RBP	5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	TNFAIP1	Q13829	316 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	UBE4A	Q14139	1066 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	ZNF460	Q14592	562 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	TMEM31	Q5JXX7	168 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	MAP3K21	Q5TCX8	1036 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	FAM117B	Q6P1L5	589 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	PKN3	Q6P5Z2	889 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	BRAP	Q7Z569	592 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	WDR63	Q8IWG1	891 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	EXOC8	Q8IYI6	725 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	DZIP1L	Q8IYY4	767 aa	Known RBP	5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	PHACTR4	Q8IZ21	702 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	KLHL23	Q8NBE8	558 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	LRRN4CL	Q8ND94	238 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	TRIB2	Q92519	343 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	SLC39A13	Q96H72	371 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	ZNF512B	Q96KM6	892 aa	Predicted RBP	5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	FAM84B	Q96KN1	310 aa	Predicted RBP	5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	ZDHHC15	Q96MV8	337 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	WRNIP1	Q96S55	665 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	APBA2	Q99767	749 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	TRIM8	Q9BZR9	551 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	PRDM12	Q9H4Q4	367 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	BICC1	Q9H694	974 aa	Known RBP	5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	ZNF451	Q9Y4E5	1061 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	TPR	P12270	2363 aa	Known RBP	5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	NCOR2	Q9Y618	2525 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	MROH5	Q6ZUA9	1318 aa		5.23	□□□□□ -1.57
VPS52-222	ENST00000495981	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	TRIM43B	A6NCK2	446 aa		5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	GRXCR1	A8MXD5	290 aa		5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	RBAK-RBAKDN	I3L0D1	243 aa		5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	TNPO2	O14787	897 aa	Known RBP	5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	DLX3	O60479	287 aa		5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	SCGB1D2	O95969	90 aa		5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	CCND3	P30281	292 aa	Predicted RBP	5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	HIBADH	P31937	336 aa	Known RBP	5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	GNAL	P38405	381 aa		5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	MAP2K3	P46734	347 aa		5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	RFX5	P48382	616 aa	Predicted RBP	5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	ID3	Q02535	119 aa		5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	MTMR1	Q13613	665 aa		5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	MAP7	Q14244	749 aa		5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	SF1	Q15637	639 aa	Known RBP	5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	NTRK3	Q16288	839 aa		5.22	□□□□□ -1.57
VPS52-222	ENST00000495981	CCDC57	Q2TAC2	916 aa		5.22	□□□□□ -1.57

Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms