RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 PPP2R3CQ969Q6 453 aa14.34□□□□□ -0.11
SKA1-205ENST00000494518 MSLNLQ96KJ4 702 aa14.34□□□□□ -0.11
SKA1-205ENST00000494518 GLT8D2Q9H1C3 349 aa14.34□□□□□ -0.11
SKA1-205ENST00000494518 CLEC1BQ9P126 229 aa14.34□□□□□ -0.11
SKA1-205ENST00000494518 GABBR1Q9UBS5 961 aa14.34□□□□□ -0.11
SKA1-205ENST00000494518 C9IYK1 514 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 CYP3A4P08684 503 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 PKN1Q16512 942 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 TSGA10IPQ3SY00 556 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 NAALADL2Q58DX5 795 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 RNF135Q8IUD6 432 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 LRRC71Q8N4P6 559 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 EFHBQ8N7U6 833 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 CRYGNQ8WXF5 182 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 POP1Q99575 1024 aaKnown RBP14.33□□□□□ -0.12
SKA1-205ENST00000494518 ZMYND12Q9H0C1 365 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 C6orf50Q9HD87 102 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 RGS18Q9NS28 235 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 AKT3Q9Y243 479 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 ARIH1Q9Y4X5 557 aaPredicted RBP14.33□□□□□ -0.12
SKA1-205ENST00000494518 SAMM50Q9Y512 469 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 PCDHB12Q9Y5F1 795 aa14.33□□□□□ -0.12
SKA1-205ENST00000494518 CHMP2AO43633 222 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 GPR32O75388 356 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 FGF18O76093 207 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 PSAPP07602 524 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 CRYBB1P53674 252 aaPredicted RBP14.32□□□□□ -0.12
SKA1-205ENST00000494518 ERVFC1P60507 584 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 SETQ01105 290 aaPredicted RBP14.32□□□□□ -0.12
SKA1-205ENST00000494518 PLPP4Q5VZY2 271 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 ZNF746Q6NUN9 644 aaPredicted RBP14.32□□□□□ -0.12
SKA1-205ENST00000494518 HFE2Q6ZVN8 426 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 SLC24A5Q71RS6 500 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 CENPQQ7L2Z9 268 aaPredicted RBP14.32□□□□□ -0.12
SKA1-205ENST00000494518 ALYREFQ86V81 257 aaKnown RBP14.32□□□□□ -0.12
SKA1-205ENST00000494518 THNSL1Q8IYQ7 743 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 COLGALT1Q8NBJ5 622 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 BBXQ8WY36 941 aaPredicted RBP14.32□□□□□ -0.12
SKA1-205ENST00000494518 GJA10Q969M2 543 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 SLC26A6Q9BXS9 759 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 UPF3BQ9BZI7 483 aaKnown RBP14.32□□□□□ -0.12
SKA1-205ENST00000494518 TLE6Q9H808 572 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 ATP6V0A4Q9HBG4 840 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 C1orf112Q9NSG2 853 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 TYW1Q9NV66 732 aaKnown RBP14.32□□□□□ -0.12
SKA1-205ENST00000494518 MAFBQ9Y5Q3 323 aaPredicted RBP14.32□□□□□ -0.12
SKA1-205ENST00000494518 SNX14Q9Y5W7 946 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 MYO10Q9HD67 2058 aa14.32□□□□□ -0.12
SKA1-205ENST00000494518 CCDC196A0A1B0GTZ2 297 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 ESYT2A0FGR8 921 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 GPR182O15218 404 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 HMGB1P09429 215 aaKnown RBP14.31□□□□□ -0.12
SKA1-205ENST00000494518 FGFR4P22455 802 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 PBX3P40426 434 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 RCAN1P53805 252 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 NLRP11P59045 1033 aaKnown RBP14.31□□□□□ -0.12
SKA1-205ENST00000494518 CCT2P78371 535 aaKnown RBP14.31□□□□□ -0.12
SKA1-205ENST00000494518 BLOC1S2Q6QNY1 142 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 TEX2Q8IWB9 1127 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 RNF169Q8NCN4 708 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 SMRP1Q8NCR6 262 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 VN1R2Q8NFZ6 395 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 CCDC12Q8WUD4 166 aaPredicted RBP14.31□□□□□ -0.12
SKA1-205ENST00000494518 APOL5Q9BWW9 433 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 CWH43Q9H720 699 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 NCOA5Q9HCD5 579 aaKnown RBP14.31□□□□□ -0.12
SKA1-205ENST00000494518 TLR9Q9NR96 1032 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 AAASQ9NRG9 546 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 TBC1D22BQ9NU19 505 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 VPS54Q9P1Q0 977 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 USP15Q9Y4E8 981 aaPredicted RBP14.31□□□□□ -0.12
SKA1-205ENST00000494518 PCDHA10Q9Y5I2 948 aa14.31□□□□□ -0.12
SKA1-205ENST00000494518 PRPF3O43395 683 aaKnown RBP14.3□□□□□ -0.12
SKA1-205ENST00000494518 ZNF862O60290 1169 aa14.3□□□□□ -0.12
SKA1-205ENST00000494518 EYA4O95677 639 aa14.3□□□□□ -0.12
SKA1-205ENST00000494518 AKAP17AQ02040 695 aaKnown RBP14.3□□□□□ -0.12
SKA1-205ENST00000494518 DSC3Q14574 896 aa14.3□□□□□ -0.12
SKA1-205ENST00000494518 UGCGQ16739 394 aa14.3□□□□□ -0.12
SKA1-205ENST00000494518 ODR4Q5SWX8 454 aa14.3□□□□□ -0.12
SKA1-205ENST00000494518 EFCAB12Q6NXP0 572 aa14.3□□□□□ -0.12
SKA1-205ENST00000494518 LLGL2Q6P1M3 1020 aa14.3□□□□□ -0.12
SKA1-205ENST00000494518 SMAP1Q8IYB5 467 aaPredicted RBP14.3□□□□□ -0.12
SKA1-205ENST00000494518 LENG9Q96B70 501 aa14.3□□□□□ -0.12
SKA1-205ENST00000494518 RPGRIP1Q96KN7 1286 aa14.3□□□□□ -0.12
SKA1-205ENST00000494518 TMEM161AQ9NX61 479 aa14.3□□□□□ -0.12
SKA1-205ENST00000494518 WDR64B1ANS9 1081 aa14.29□□□□□ -0.12
SKA1-205ENST00000494518 MSH4O15457 936 aa14.29□□□□□ -0.12
SKA1-205ENST00000494518 EDIL3O43854 480 aa14.29□□□□□ -0.12
SKA1-205ENST00000494518 CSDE1O75534 798 aaKnown RBP14.29□□□□□ -0.12
SKA1-205ENST00000494518 OATP04181 439 aa14.29□□□□□ -0.12
SKA1-205ENST00000494518 SP100P23497 879 aaPredicted RBP14.29□□□□□ -0.12
SKA1-205ENST00000494518 GNA11P29992 359 aa14.29□□□□□ -0.12
SKA1-205ENST00000494518 PRKCEQ02156 737 aa14.29□□□□□ -0.12
SKA1-205ENST00000494518 COASYQ13057 564 aa14.29□□□□□ -0.12
SKA1-205ENST00000494518 NTRK3Q16288 839 aa14.29□□□□□ -0.12
SKA1-205ENST00000494518 HERC4Q5GLZ8 1057 aaPredicted RBP14.29□□□□□ -0.12
SKA1-205ENST00000494518 LRRC55Q6ZSA7 311 aa14.29□□□□□ -0.12
SKA1-205ENST00000494518 CCDC136Q96JN2 1154 aa14.29□□□□□ -0.12
SKA1-205ENST00000494518 FBXL18Q96ME1 805 aa14.29□□□□□ -0.12
SKA1-205ENST00000494518 SCLT1Q96NL6 688 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms