RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 THNSL1Q8IYQ7 743 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 EFHBQ8N7U6 833 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 POF1BQ8WVV4 589 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 RSPH1Q8WYR4 309 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 JAKMIP1Q96N16 626 aaKnown RBP13.1□□□□□ -0.31
COL6A3-213ENST00000493475 ADAM2Q99965 735 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 TLE6Q9H808 572 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 RGS18Q9NS28 235 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 TMEM260Q9NX78 707 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 AKT3Q9Y243 479 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 TBKBP1A7MCY6 615 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 FAM86B1E9PN63 330 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 PRPF3O43395 683 aaKnown RBP13.09□□□□□ -0.31
COL6A3-213ENST00000493475 MBTPS2O43462 519 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 CCNE2O96020 404 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 ITGB1P05556 798 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 FAM86B2P0C5J1 330 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 JAK3P52333 1124 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 KRT17Q04695 432 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 CLUL1Q15846 466 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 PKN1Q16512 942 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 TMEM266Q2M3C6 531 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 TYW1BQ6NUM6 668 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 Q6ZUG5 572 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 NLRC5Q86WI3 1866 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 CCDC60Q8IWA6 550 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-213ENST00000493475 KIAA0319LQ8IZA0 1049 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 LINC01599Q8WXQ3 324 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 BRF1Q92994 677 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 RNF26Q9BY78 433 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-213ENST00000493475 ELAC1Q9H777 363 aaKnown RBP13.09□□□□□ -0.31
COL6A3-213ENST00000493475 ERVK-5Q9HDB9 667 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 CD320Q9NPF0 282 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 TLR9Q9NR96 1032 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 TMEM161AQ9NX61 479 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 ST3GAL5Q9UNP4 418 aa13.09□□□□□ -0.31
COL6A3-213ENST00000493475 MAFBQ9Y5Q3 323 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-213ENST00000493475 CPLX1O14810 134 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 GAS7O60861 476 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 PPFIA3O75145 1194 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 CDC27P30260 824 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 ADD1P35611 737 aaKnown RBP13.08□□□□□ -0.32
COL6A3-213ENST00000493475 NRIP1P48552 1158 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 DNM2P50570 870 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 APOBRQ0VD83 1088 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 ADAM15Q13444 863 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 KIZQ2M2Z5 673 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 ADCK5Q3MIX3 580 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 LRRC43Q8N309 656 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 TMEM87AQ8NBN3 555 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 SPPL3Q8TCT6 385 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 ZBTB10Q96DT7 871 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 RIT2Q99578 217 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 SH3GLB2Q9NR46 395 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 DACT1Q9NYF0 836 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 GABBR1Q9UBS5 961 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 NOC2LQ9Y3T9 749 aaKnown RBP13.08□□□□□ -0.32
COL6A3-213ENST00000493475 TTC3P53804 2025 aa13.08□□□□□ -0.32
COL6A3-213ENST00000493475 IGLV3-22A0A075B6J6 115 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 FGF18O76093 207 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 C22orf31O95567 290 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 LINC00271P0C7V0 271 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 LTBRP36941 435 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 USP11P51784 963 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 NLRP5P59047 1200 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 COASYQ13057 564 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 TRMT1LQ7Z2T5 733 aaKnown RBP13.07□□□□□ -0.32
COL6A3-213ENST00000493475 RTN4RL1Q86UN2 441 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-213ENST00000493475 FAM177A1Q8N128 213 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-213ENST00000493475 CRIPAKQ8N1N5 446 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 FBXL16Q8N461 479 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 RDM1Q8NG50 284 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 KHSRPQ92945 711 aaKnown RBP eCLIP13.07□□□□□ -0.32
COL6A3-213ENST00000493475 OSMRQ99650 979 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 JPH2Q9BR39 696 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-213ENST00000493475 TEKT3Q9BXF9 490 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 SLC26A6Q9BXS9 759 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 MRPL9Q9BYD2 267 aaKnown RBP13.07□□□□□ -0.32
COL6A3-213ENST00000493475 TMEM117Q9H0C3 514 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 NGRNQ9NPE2 291 aaKnown RBP13.07□□□□□ -0.32
COL6A3-213ENST00000493475 LZTS1Q9Y250 596 aa13.07□□□□□ -0.32
COL6A3-213ENST00000493475 DHX15O43143 795 aaKnown RBP13.06□□□□□ -0.32
COL6A3-213ENST00000493475 DKC1O60832 514 aaKnown RBP eCLIP13.06□□□□□ -0.32
COL6A3-213ENST00000493475 TBX10O75333 385 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 EYA4O95677 639 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 VTNP04004 478 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 OATP04181 439 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 SKIP12755 728 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 EIF4BP23588 611 aaKnown RBP13.06□□□□□ -0.32
COL6A3-213ENST00000493475 CIITAP33076 1130 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 IRS1P35568 1242 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 TBC1D8BQ0IIM8 1120 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 HERC4Q5GLZ8 1057 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-213ENST00000493475 LRCH2Q5VUJ6 765 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 EFCAB12Q6NXP0 572 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 RBM23Q86U06 439 aaKnown RBP13.06□□□□□ -0.32
COL6A3-213ENST00000493475 EXOC8Q8IYI6 725 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 SMRP1Q8NCR6 262 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 NLRP7Q8WX94 980 aa13.06□□□□□ -0.32
COL6A3-213ENST00000493475 CCDC136Q96JN2 1154 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms