RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 BDNFP23560 247 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 GJA4P35212 333 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 ADGRE1Q14246 886 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 CNN3Q15417 329 aaKnown RBP5.7□□□□□ -1.5
VPS13A-212ENST00000493341 CCDC174Q6PII3 467 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 TMPRSS7Q7RTY8 843 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 DAAM2Q86T65 1068 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 TEX19Q8NA77 164 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 SCARF2Q96GP6 870 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-212ENST00000493341 RIPOR3Q96MK2 946 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 GBP4Q96PP9 640 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 CGRRF1Q99675 332 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 NUP62CLQ9H1M0 184 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 KCTD10Q9H3F6 313 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 PRDM12Q9H4Q4 367 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 IFT122Q9HBG6 1241 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 AS3MTQ9HBK9 375 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 LRRC4CQ9HCJ2 640 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 C9orf78Q9NZ63 289 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-212ENST00000493341 FBLN5Q9UBX5 448 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 LRCH1Q9Y2L9 728 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 TELO2Q9Y4R8 837 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 PCDHGB3Q9Y5G1 929 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 ST20-MTHFSA0A0A6YYL1 179 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 UBA6A0AVT1 1052 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-212ENST00000493341 CAPN8A6NHC0 703 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 CCDC154A6NI56 674 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 RASA4BC9J798 803 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 RASA4O43374 803 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 PRPF6O94906 941 aaKnown RBP5.7□□□□□ -1.5
VPS13A-212ENST00000493341 CEACAM5P06731 702 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 MMEP08473 750 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 TACR1P25103 407 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 SDHAP31040 664 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 PIK3CBP42338 1070 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 CLCN7P51798 805 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 BTKQ06187 659 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 SLC4A8Q2Y0W8 1093 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 HSF5Q4G112 596 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-212ENST00000493341 CCDC157Q569K6 752 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 UNQ6494/PRO21346Q6UXR6 183 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 RIOX2Q8IUF8 465 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 OR2C3Q8N628 320 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 DEPTORQ8TB45 409 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 SYTL4Q96C24 671 aaPredicted RBP5.7□□□□□ -1.5
VPS13A-212ENST00000493341 JMJD8Q96S16 334 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 SELENOOQ9BVL4 669 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 VPS11Q9H270 941 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 ZHX3Q9H4I2 956 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 C7orf69Q9H7B7 122 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 RC3H2Q9HBD1 1191 aaKnown RBP5.7□□□□□ -1.5
VPS13A-212ENST00000493341 SEMA3GQ9NS98 782 aa5.7□□□□□ -1.5
VPS13A-212ENST00000493341 CFAP69A5D8W1 941 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 HGSO14964 777 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 KPNA5O15131 536 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 MGEA5O60502 916 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 C4BPAP04003 597 aaKnown RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 CHKAP35790 457 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 PRAMEF9Q5VWM5 478 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 TXNRD3Q86VQ6 643 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 COL23A1Q86Y22 540 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 NKAPQ8N5F7 415 aaKnown RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 HIPK4Q8NE63 616 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 LRTOMTQ8WZ04 291 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 TRIM63Q969Q1 353 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 ZNF775Q96BV0 537 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 MTA3Q9BTC8 594 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 ACE2Q9BYF1 805 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 STOML1Q9UBI4 398 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 CDC23Q9UJX2 597 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 CORO2BQ9UQ03 480 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 DGKBQ9Y6T7 804 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 CNTNAP5Q8WYK1 1306 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 LRRC10BA6NIK2 292 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 RHPN2P1A8MT19 583 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 HTRA2O43464 458 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 ESR1P03372 595 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 ABCB4P21439 1286 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 TRIM25Q14258 630 aaKnown RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 MAPRE1Q15691 268 aaKnown RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 PDCD2Q16342 344 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 TTC38Q5R3I4 469 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 SWSAP1Q6NVH7 229 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 LMBR1LQ6UX01 489 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 SLC41A1Q8IVJ1 513 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 OXR1Q8N573 874 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 MARCH10Q8NA82 808 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 TSPEARQ8WU66 669 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 CLEC4DQ8WXI8 215 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 ASB15Q8WXK1 588 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 HHIPL1Q96JK4 782 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 WDR12Q9GZL7 423 aaKnown RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 BCCIPQ9P287 314 aaKnown RBP eCLIP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 MYOTQ9UBF9 498 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 TNFRSF10DQ9UBN6 386 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 SWAP70Q9UH65 585 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 PLAGL2Q9UPG8 496 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 LAS1LQ9Y4W2 734 aaKnown RBP5.69□□□□□ -1.5
VPS13A-212ENST00000493341 NUMBLQ9Y6R0 609 aa5.69□□□□□ -1.5
VPS13A-212ENST00000493341 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms