RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 ABHD8Q96I13 439 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 GTSE1Q9NYZ3 720 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 SCINQ9Y6U3 715 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 TADA2AO75478 443 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 RPS6KA4O75676 772 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 SUN1O94901 812 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 IRF1P10914 325 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 SDE2Q6IQ49 451 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 MAML1Q92585 1016 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 TJP2Q9UDY2 1190 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 CFAP65Q6ZU64 1925 aaKnown RBP14.05□□□□□ -0.16
COL6A3-212ENST00000491769 EXOC1LA0A1B0GW35 172 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 RBM6P78332 1123 aaKnown RBP14.05□□□□□ -0.16
COL6A3-212ENST00000491769 PTPN21Q16825 1174 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 SCG3Q8WXD2 468 aaKnown RBP14.05□□□□□ -0.16
COL6A3-212ENST00000491769 RMDN1Q96DB5 314 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 PUS7LQ9H0K6 701 aaKnown RBP14.05□□□□□ -0.16
COL6A3-212ENST00000491769 ASNSD1Q9NWL6 643 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 UBE4BO95155 1302 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 DFFAO00273 331 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 SLC16A4O15374 487 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 SEPT2Q15019 361 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 ADCK2Q7Z695 626 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 MAGEB5Q9BZ81 275 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 INSRP06213 1382 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 MAST1Q9Y2H9 1570 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 SPATA2LQ8IUW3 424 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-212ENST00000491769 DCUN1D1Q96GG9 259 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 DDX50Q9BQ39 737 aaKnown RBP14.05□□□□□ -0.16
COL6A3-212ENST00000491769 GABBR1Q9UBS5 961 aa14.05□□□□□ -0.16
COL6A3-212ENST00000491769 CXCR5P32302 372 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 NR5A1Q13285 461 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 MCPH1Q8NEM0 835 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 GSDMAQ96QA5 445 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 EPAS1Q99814 870 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.04□□□□□ -0.16
COL6A3-212ENST00000491769 FAM217BQ9NTX9 383 aaPredicted RBP14.04□□□□□ -0.16
COL6A3-212ENST00000491769 ABCC2Q92887 1545 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 E2F6O75461 281 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 RBL2Q08999 1139 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 AP1B1Q10567 949 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 TAGAPQ8N103 731 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 COPRSQ9NQ92 184 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 A8MXQ7 604 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 PGRMC1O00264 195 aaKnown RBP14.04□□□□□ -0.16
COL6A3-212ENST00000491769 TMCO5AQ8N6Q1 288 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 OTULINQ96BN8 352 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 CENPKQ9BS16 269 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 EPB41L5Q9HCM4 733 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 PIN4Q9Y237 131 aaKnown RBP14.04□□□□□ -0.16
COL6A3-212ENST00000491769 PHLPP2Q6ZVD8 1323 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 PRRG1O14668 218 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 GRIN3BO60391 1043 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 POU5F1BQ06416 359 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 KIF12Q96FN5 646 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 TRIM15Q9C019 465 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 C2orf40Q9H1Z8 148 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 ACAD9Q9H845 621 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 LSM7Q9UK45 103 aaKnown RBP14.04□□□□□ -0.16
COL6A3-212ENST00000491769 CARMIL3Q8ND23 1372 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 ASB14A6NK59 587 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 RASGRF2O14827 1237 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 IKBKBO14920 756 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 TMEM270Q6UE05 265 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.04□□□□□ -0.16
COL6A3-212ENST00000491769 CDV3Q9UKY7 258 aaKnown RBP14.04□□□□□ -0.16
COL6A3-212ENST00000491769 ATP7AQ04656 1500 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 IQANK1A0A1B0GTG1 560 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 MYO1DO94832 1006 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 ZNF235Q14590 738 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 SMAD1Q15797 465 aaKnown RBP14.04□□□□□ -0.16
COL6A3-212ENST00000491769 SYTL3Q4VX76 610 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 MORC4Q8TE76 937 aa14.04□□□□□ -0.16
COL6A3-212ENST00000491769 POLR3FQ9H1D9 316 aaPredicted RBP14.04□□□□□ -0.16
COL6A3-212ENST00000491769 SRGAP2O75044 1071 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 C6orf222P0C671 652 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-212ENST00000491769 COPB2P35606 906 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 PRKCQQ04759 706 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 MEI1Q5TIA1 1274 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 TRIM54Q9BYV2 358 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 GPR108Q9NPR9 543 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 HACL1Q9UJ83 578 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 TPX2Q9ULW0 747 aaKnown RBP14.03□□□□□ -0.16
COL6A3-212ENST00000491769 STAP1Q9ULZ2 295 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 C2orf54Q08AI8 447 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 CENPUQ71F23 418 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 TTC8Q8TAM2 541 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 DNAJC7Q99615 494 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 ADAM22Q9P0K1 906 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 L3MBTL1Q9Y468 752 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 ZSCAN9O15535 394 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-212ENST00000491769 PPP6R2O75170 966 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 LCP1P13796 627 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 CYP2B6P20813 491 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 PDIK1LQ8N165 341 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 MB21D1Q8N884 522 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 RPAP3Q9H6T3 665 aaPredicted RBP14.03□□□□□ -0.16
COL6A3-212ENST00000491769 MYOM2P54296 1465 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 TJP3O95049 919 aa14.03□□□□□ -0.16
COL6A3-212ENST00000491769 MMP1P03956 469 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms