RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 GPRC5BQ9NZH0 403 aa6.67□□□□□ -1.34
SCN1A-206ENST00000491429 A0A1W2PRX2 142 aa6.66□□□□□ -1.34
SCN1A-206ENST00000491429 PRAMEF22A3QJZ6 481 aa6.66□□□□□ -1.34
SCN1A-206ENST00000491429 RASSF10A6NK89 507 aa6.66□□□□□ -1.34
SCN1A-206ENST00000491429 SCDO00767 359 aa6.66□□□□□ -1.34
SCN1A-206ENST00000491429 RPS6KA4O75676 772 aa6.66□□□□□ -1.34
SCN1A-206ENST00000491429 PEX11BO96011 259 aa6.66□□□□□ -1.34
SCN1A-206ENST00000491429 RAB33AQ14088 237 aa6.66□□□□□ -1.34
SCN1A-206ENST00000491429 NOSTRINQ8IVI9 506 aa6.66□□□□□ -1.34
SCN1A-206ENST00000491429 CDC6Q99741 560 aa6.66□□□□□ -1.34
SCN1A-206ENST00000491429 CTDP1Q9Y5B0 961 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-206ENST00000491429 TRBV23-1A0A0A0MS06 115 aa6.65□□□□□ -1.34
SCN1A-206ENST00000491429 SUMO1P63165 101 aaKnown RBP6.65□□□□□ -1.34
SCN1A-206ENST00000491429 LACTBP83111 547 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-206ENST00000491429 ATP2C1P98194 919 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-206ENST00000491429 FSTL1Q12841 308 aa6.65□□□□□ -1.34
SCN1A-206ENST00000491429 HNRNPA0Q13151 305 aaKnown RBP6.65□□□□□ -1.34
SCN1A-206ENST00000491429 HIPK4Q8NE63 616 aa6.65□□□□□ -1.34
SCN1A-206ENST00000491429 RABGGTAQ92696 567 aa6.65□□□□□ -1.34
SCN1A-206ENST00000491429 ZNF669Q96BR6 464 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-206ENST00000491429 GBP4Q96PP9 640 aa6.65□□□□□ -1.34
SCN1A-206ENST00000491429 GSTA4O15217 222 aa6.64□□□□□ -1.35
SCN1A-206ENST00000491429 CRTAMO95727 393 aa6.64□□□□□ -1.35
SCN1A-206ENST00000491429 BMP5P22003 454 aa6.64□□□□□ -1.35
SCN1A-206ENST00000491429 FAM47CQ5HY64 1035 aa6.64□□□□□ -1.35
SCN1A-206ENST00000491429 LAIR1Q6GTX8 287 aa6.64□□□□□ -1.35
SCN1A-206ENST00000491429 ZC3H7AQ8IWR0 971 aaKnown RBP6.64□□□□□ -1.35
SCN1A-206ENST00000491429 ANKRD35Q8N283 1001 aa6.64□□□□□ -1.35
SCN1A-206ENST00000491429 FOXP2O15409 715 aa6.63□□□□□ -1.35
SCN1A-206ENST00000491429 ADCY7P51828 1080 aa6.63□□□□□ -1.35
SCN1A-206ENST00000491429 CNGB1Q14028 1251 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-206ENST00000491429 TOB2Q14106 344 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-206ENST00000491429 NRDE2Q9H7Z3 1164 aa6.63□□□□□ -1.35
SCN1A-206ENST00000491429 PFDN2Q9UHV9 154 aa6.63□□□□□ -1.35
SCN1A-206ENST00000491429 TCF3P15923 654 aa6.62□□□□□ -1.35
SCN1A-206ENST00000491429 VOPP1Q96AW1 172 aa6.62□□□□□ -1.35
SCN1A-206ENST00000491429 MIEF2Q96C03 454 aa6.62□□□□□ -1.35
SCN1A-206ENST00000491429 EXOC2Q96KP1 924 aa6.62□□□□□ -1.35
SCN1A-206ENST00000491429 KCNH7Q9NS40 1196 aa6.62□□□□□ -1.35
SCN1A-206ENST00000491429 MAGEL2Q9UJ55 1249 aa6.62□□□□□ -1.35
SCN1A-206ENST00000491429 ASB1Q9Y576 335 aa6.62□□□□□ -1.35
SCN1A-206ENST00000491429 GOLGA6L22H0YM25 854 aa6.61□□□□□ -1.35
SCN1A-206ENST00000491429 NAT1P18440 290 aa6.61□□□□□ -1.35
SCN1A-206ENST00000491429 APEX1P27695 318 aaKnown RBP6.61□□□□□ -1.35
SCN1A-206ENST00000491429 GABREP78334 506 aa6.61□□□□□ -1.35
SCN1A-206ENST00000491429 RPL10LQ96L21 214 aaKnown RBP6.61□□□□□ -1.35
SCN1A-206ENST00000491429 GPHA2Q96T91 129 aa6.61□□□□□ -1.35
SCN1A-206ENST00000491429 GMLQ99445 158 aa6.61□□□□□ -1.35
SCN1A-206ENST00000491429 TRIM55Q9BYV6 548 aa6.61□□□□□ -1.35
SCN1A-206ENST00000491429 PODXL2Q9NZ53 605 aa6.61□□□□□ -1.35
SCN1A-206ENST00000491429 COQ6Q9Y2Z9 468 aa6.61□□□□□ -1.35
SCN1A-206ENST00000491429 VWA7Q9Y334 891 aa6.61□□□□□ -1.35
SCN1A-206ENST00000491429 MSRB2Q9Y3D2 182 aa6.61□□□□□ -1.35
SCN1A-206ENST00000491429 TMEM191CA6NGB0 347 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 FAM20BO75063 409 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 MAFO75444 373 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-206ENST00000491429 MAN2A2P49641 1150 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 ZC3H6P61129 1189 aaKnown RBP6.6□□□□□ -1.35
SCN1A-206ENST00000491429 ADAM8P78325 824 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 CATSPEREQ5SY80 951 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 KLHDC10Q6PID8 442 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 GAREM2Q75VX8 874 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 MRGPREQ86SM8 312 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 ZBTB38Q8NAP3 1195 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-206ENST00000491429 GPR150Q8NGU9 434 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 CALML6Q8TD86 181 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 DLG3Q92796 817 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 ERCC4Q92889 916 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-206ENST00000491429 SLC6A15Q9H2J7 730 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 B3GALT1Q9Y5Z6 326 aa6.6□□□□□ -1.35
SCN1A-206ENST00000491429 PDPK1O15530 556 aa6.59□□□□□ -1.35
SCN1A-206ENST00000491429 DIAPH1O60610 1272 aaKnown RBP6.59□□□□□ -1.35
SCN1A-206ENST00000491429 PROZP22891 400 aa6.59□□□□□ -1.35
SCN1A-206ENST00000491429 SSRP1Q08945 709 aaKnown RBP6.59□□□□□ -1.35
SCN1A-206ENST00000491429 MAP3K12Q12852 859 aa6.59□□□□□ -1.35
SCN1A-206ENST00000491429 TMEM132BQ14DG7 1078 aa6.59□□□□□ -1.35
SCN1A-206ENST00000491429 ELAVL1Q15717 326 aaKnown RBP6.59□□□□□ -1.35
SCN1A-206ENST00000491429 MTERF2Q49AM1 385 aa6.59□□□□□ -1.35
SCN1A-206ENST00000491429 ANKRD53Q8N9V6 530 aa6.59□□□□□ -1.35
SCN1A-206ENST00000491429 SLC43A3Q8NBI5 491 aa6.59□□□□□ -1.35
SCN1A-206ENST00000491429 SLC7A6OSQ96CW6 309 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-206ENST00000491429 IPO9Q96P70 1041 aaKnown RBP6.59□□□□□ -1.35
SCN1A-206ENST00000491429 GPR87Q9BY21 358 aa6.59□□□□□ -1.35
SCN1A-206ENST00000491429 RBM8AQ9Y5S9 174 aaKnown RBP6.59□□□□□ -1.35
SCN1A-206ENST00000491429 C2orf78A6NCI8 922 aa6.58□□□□□ -1.36
SCN1A-206ENST00000491429 FAM153BP0C7A2 387 aa6.58□□□□□ -1.36
SCN1A-206ENST00000491429 SDHAP31040 664 aa6.58□□□□□ -1.36
SCN1A-206ENST00000491429 ADRA1BP35368 520 aa6.58□□□□□ -1.36
SCN1A-206ENST00000491429 IL12RB1P42701 662 aa6.58□□□□□ -1.36
SCN1A-206ENST00000491429 BPIFB4P59827 614 aa6.58□□□□□ -1.36
SCN1A-206ENST00000491429 MBNL2Q5VZF2 373 aaKnown RBP6.58□□□□□ -1.36
SCN1A-206ENST00000491429 ZNF662Q6ZS27 426 aa6.58□□□□□ -1.36
SCN1A-206ENST00000491429 GSPT2Q8IYD1 628 aaKnown RBP6.58□□□□□ -1.36
SCN1A-206ENST00000491429 LPPQ93052 612 aa6.58□□□□□ -1.36
SCN1A-206ENST00000491429 XDHP47989 1333 aa6.57□□□□□ -1.36
SCN1A-206ENST00000491429 UBE2QL1A1L167 161 aa6.57□□□□□ -1.36
SCN1A-206ENST00000491429 TRAF5O00463 557 aa6.57□□□□□ -1.36
SCN1A-206ENST00000491429 H2AFYO75367 372 aaKnown RBP6.57□□□□□ -1.36
SCN1A-206ENST00000491429 RASGRP1O95267 797 aa6.57□□□□□ -1.36
SCN1A-206ENST00000491429 PTGS2P35354 604 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms