RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 ITGB1P05556 798 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 USP11P51784 963 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 CRYBB1P53674 252 aaPredicted RBP15.41■□□□□ 0.06
COL6A3-211ENST00000491233 HYAL1Q12794 435 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 CAMK1Q14012 370 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 UGCGQ16739 394 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 PUS10Q3MIT2 529 aaKnown RBP15.41■□□□□ 0.06
COL6A3-211ENST00000491233 LRRC71Q8N4P6 559 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 LINC01465Q8N7H1 131 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 ZNF274Q96GC6 653 aaPredicted RBP15.41■□□□□ 0.06
COL6A3-211ENST00000491233 AIFM3Q96NN9 605 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 MAP7D2Q96T17 732 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 RIT2Q99578 217 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 C22orf23Q9BZE7 217 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 UNC45AQ9H3U1 944 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 RGS18Q9NS28 235 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 PCDHB7Q9Y5E2 793 aa15.41■□□□□ 0.06
COL6A3-211ENST00000491233 C9IYK1 514 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 TBX10O75333 385 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 GPR32O75388 356 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 DNAJB1P25685 340 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 SFNP31947 248 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 SSTR3P32745 418 aaPredicted RBP15.4■□□□□ 0.06
COL6A3-211ENST00000491233 GTF2F1P35269 517 aaKnown RBP eCLIP15.4■□□□□ 0.06
COL6A3-211ENST00000491233 LTBRP36941 435 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 JAK3P52333 1124 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 NAALADL2Q58DX5 795 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 EFCAB12Q6NXP0 572 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 CPLX2Q6PUV4 134 aaKnown RBP15.4■□□□□ 0.06
COL6A3-211ENST00000491233 FAM43BQ6ZT52 329 aaPredicted RBP15.4■□□□□ 0.06
COL6A3-211ENST00000491233 SLC24A5Q71RS6 500 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 BLIDQ8IZY5 108 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 GJD3Q8N144 294 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 KLHL23Q8NBE8 558 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 DAGLBQ8NCG7 672 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 PDRG1Q9NUG6 133 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 AKT3Q9Y243 479 aa15.4■□□□□ 0.06
COL6A3-211ENST00000491233 TBKBP1A7MCY6 615 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 M0R2N6 131 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 NCK2O43639 380 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 NEFLP07196 543 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 IRS1P35568 1242 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 NLRP11P59045 1033 aaKnown RBP15.39■□□□□ 0.05
COL6A3-211ENST00000491233 DLX2Q07687 328 aaPredicted RBP15.39■□□□□ 0.05
COL6A3-211ENST00000491233 DSC3Q14574 896 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 NPY5RQ15761 445 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 CLUL1Q15846 466 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 CTC1Q2NKJ3 1217 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 Q4G0T1 1027 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 SPOUT1Q5T280 376 aaKnown RBP15.39■□□□□ 0.05
COL6A3-211ENST00000491233 SPPL3Q8TCT6 385 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 POF1BQ8WVV4 589 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 ZNF668Q96K58 619 aaPredicted RBP15.39■□□□□ 0.05
COL6A3-211ENST00000491233 IGFLR1Q9H665 355 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 NRBP2Q9NSY0 501 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 RNF216Q9NWF9 866 aaPredicted RBP15.39■□□□□ 0.05
COL6A3-211ENST00000491233 HCSTQ9UBK5 93 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 SEPT9Q9UHD8 586 aaPredicted RBP15.39■□□□□ 0.05
COL6A3-211ENST00000491233 FAM50BQ9Y247 325 aa15.39■□□□□ 0.05
COL6A3-211ENST00000491233 LINC01565O15544 149 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 PSMD10O75832 226 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 FGFR1P11362 822 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 TMOD1P28289 359 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 NONOQ15233 471 aaKnown RBP eCLIP15.38■□□□□ 0.05
COL6A3-211ENST00000491233 TMEM31Q5JXX7 168 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 FAM102BQ5T8I3 360 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 MIER3Q7Z3K6 550 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 ADGRD2Q7Z7M1 963 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 RDM1Q8NG50 284 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 PPP2R3CQ969Q6 453 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 LRFN3Q9BTN0 628 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 ADAMTS10Q9H324 1103 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 ATP6V0A4Q9HBG4 840 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 TMEM161AQ9NX61 479 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 ARID2Q68CP9 1835 aa15.38■□□□□ 0.05
COL6A3-211ENST00000491233 CYP3A7-CYP3A51PA0A087WV96 503 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 FAM86C2PA6NEL3 165 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 CYP3A7P24462 503 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 GPC3P51654 580 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 ZP2Q05996 745 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 TBC1D8BQ0IIM8 1120 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 SCRN1Q12765 414 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 INF2Q27J81 1249 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 MTERF2Q49AM1 385 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 GALNT17Q6IS24 598 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 MOXD1Q6UVY6 613 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 FAM177A1Q8N128 213 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-211ENST00000491233 MBOAT7Q96N66 472 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 SCLT1Q96NL6 688 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 ELAC1Q9H777 363 aaKnown RBP15.37■□□□□ 0.05
COL6A3-211ENST00000491233 C11orf16Q9NQ32 467 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 AAASQ9NRG9 546 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 KCNJ14Q9UNX9 436 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 PCDHB12Q9Y5F1 795 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 PCDHGC5Q9Y5F6 944 aa15.37■□□□□ 0.05
COL6A3-211ENST00000491233 TMEM150BA6NC51 233 aa15.36■□□□□ 0.05
COL6A3-211ENST00000491233 PI4K2BG5E9Z4 385 aa15.36■□□□□ 0.05
COL6A3-211ENST00000491233 MBTPS2O43462 519 aa15.36■□□□□ 0.05
COL6A3-211ENST00000491233 CDKL5O76039 1030 aa15.36■□□□□ 0.05
COL6A3-211ENST00000491233 EIF4BP23588 611 aaKnown RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms