RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 HOXA13P31271 388 aaPredicted RBP13.84□□□□□ -0.19
SHOX2-205ENST00000490689 USP11P51784 963 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 MEA1Q16626 185 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 KIAA0895Q8NCT3 520 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 SLC35G2Q8TBE7 412 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 FNBP1Q96RU3 617 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 MTRQ99707 1265 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 PLA2G12BQ9BX93 195 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 TXLNGQ9NUQ3 528 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 PREX1Q8TCU6 1659 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 ERVV-1B6SEH8 477 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 FTLP02792 175 aaPredicted RBP13.84□□□□□ -0.19
SHOX2-205ENST00000490689 CYP19A1P11511 503 aaPredicted RBP13.84□□□□□ -0.19
SHOX2-205ENST00000490689 LONP2Q86WA8 852 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 SPATA20Q8TB22 786 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 EDEM3Q9BZQ6 932 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 USP40Q9NVE5 1235 aa13.84□□□□□ -0.19
SHOX2-205ENST00000490689 ORC4O43929 436 aa13.83□□□□□ -0.19
SHOX2-205ENST00000490689 HSPA1LP34931 641 aa13.83□□□□□ -0.19
SHOX2-205ENST00000490689 SKOR1P84550 965 aa13.83□□□□□ -0.19
SHOX2-205ENST00000490689 IL17AQ16552 155 aa13.83□□□□□ -0.19
SHOX2-205ENST00000490689 ZC3H18Q86VM9 953 aaKnown RBP13.83□□□□□ -0.19
SHOX2-205ENST00000490689 SLFN12Q8IYM2 578 aa13.83□□□□□ -0.19
SHOX2-205ENST00000490689 GBP7Q8N8V2 638 aaPredicted RBP13.83□□□□□ -0.19
SHOX2-205ENST00000490689 GLIS3Q8NEA6 775 aa13.83□□□□□ -0.19
SHOX2-205ENST00000490689 ZNF507Q8TCN5 953 aa13.83□□□□□ -0.19
SHOX2-205ENST00000490689 NSUN4Q96CB9 384 aaKnown RBP13.83□□□□□ -0.19
SHOX2-205ENST00000490689 ZNF512BQ96KM6 892 aaPredicted RBP13.83□□□□□ -0.19
SHOX2-205ENST00000490689 CYTH2Q99418 400 aa13.83□□□□□ -0.19
SHOX2-205ENST00000490689 TECPR2O15040 1411 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 A0A0G2JND7 137 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 GOLGA8IPA6NC78 632 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 WTIPA6NIX2 430 aaPredicted RBP13.83□□□□□ -0.2
SHOX2-205ENST00000490689 GOLGA8JA6NMD2 632 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 FSBPO95073 299 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 MAPK4P31152 587 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 ZNF844Q08AG5 666 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 STRN3Q13033 797 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 ANKRD20A8PQ5CZ79 823 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 PPP1R21Q6ZMI0 780 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 CNBD1Q8NA66 436 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 PRPF38AQ8NAV1 312 aaKnown RBP13.83□□□□□ -0.2
SHOX2-205ENST00000490689 P3H4Q92791 437 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 NUDCD1Q96RS6 583 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 GGA1Q9UJY5 639 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 TTC7AQ9ULT0 858 aaPredicted RBP13.83□□□□□ -0.2
SHOX2-205ENST00000490689 STXBP3O00186 592 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 ATP2A2P16615 1042 aaKnown RBP13.83□□□□□ -0.2
SHOX2-205ENST00000490689 WDR44Q5JSH3 913 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 MSL3Q8N5Y2 521 aaKnown RBP13.83□□□□□ -0.2
SHOX2-205ENST00000490689 JCADQ9P266 1359 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 ZNF263O14978 683 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 EVX2Q03828 476 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 KNOP1Q1ED39 458 aaKnown RBP13.83□□□□□ -0.2
SHOX2-205ENST00000490689 APTXQ7Z2E3 356 aaKnown RBP13.83□□□□□ -0.2
SHOX2-205ENST00000490689 APBB1IPQ7Z5R6 666 aaPredicted RBP13.83□□□□□ -0.2
SHOX2-205ENST00000490689 SUPT20HQ8NEM7 779 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 FBXO25Q8TCJ0 367 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 EPS8L3Q8TE67 593 aaKnown RBP13.83□□□□□ -0.2
SHOX2-205ENST00000490689 KIF9Q9HAQ2 790 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 NAGPAQ9UK23 515 aa13.83□□□□□ -0.2
SHOX2-205ENST00000490689 USP15Q9Y4E8 981 aaPredicted RBP13.83□□□□□ -0.2
SHOX2-205ENST00000490689 CFAP73A6NFT4 308 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 GCLMP48507 274 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 CFAP157Q5JU67 520 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 AGBL2Q5U5Z8 902 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 SPATA21Q7Z572 469 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 PALM2Q8IXS6 379 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 ZBTB10Q96DT7 871 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 FAM118BQ9BPY3 351 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 TYW1Q9NV66 732 aaKnown RBP13.82□□□□□ -0.2
SHOX2-205ENST00000490689 PODXLO00592 558 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 JAMLQ86YT9 394 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 CPXCR1Q8N123 301 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 HAUS1Q96CS2 278 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 LRRC37BQ96QE4 947 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 IMPG2Q9BZV3 1241 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 CLTCQ00610 1675 aaKnown RBP13.82□□□□□ -0.2
SHOX2-205ENST00000490689 TMEM120BA0PK00 339 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 LIN9Q5TKA1 542 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 CENPPQ6IPU0 288 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 RFFLQ8WZ73 363 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 C9orf72Q96LT7 481 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 OSGEPQ9NPF4 335 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 SCOCQ9UIL1 159 aa13.82□□□□□ -0.2
SHOX2-205ENST00000490689 USP17L10C9JJH3 530 aa13.81□□□□□ -0.2
SHOX2-205ENST00000490689 UBOX5O94941 541 aa13.81□□□□□ -0.2
SHOX2-205ENST00000490689 SLFN13Q68D06 897 aa13.81□□□□□ -0.2
SHOX2-205ENST00000490689 ERP44Q9BS26 406 aa13.81□□□□□ -0.2
SHOX2-205ENST00000490689 ALG13Q9NP73 1137 aaKnown RBP13.81□□□□□ -0.2
SHOX2-205ENST00000490689 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.81□□□□□ -0.2
SHOX2-205ENST00000490689 TNNI1P19237 187 aa13.81□□□□□ -0.2
SHOX2-205ENST00000490689 MTM1Q13496 603 aa13.81□□□□□ -0.2
SHOX2-205ENST00000490689 ASPRV1Q53RT3 343 aa13.81□□□□□ -0.2
SHOX2-205ENST00000490689 FIGNQ5HY92 759 aa13.81□□□□□ -0.2
SHOX2-205ENST00000490689 SWT1Q5T5J6 900 aaKnown RBP13.81□□□□□ -0.2
SHOX2-205ENST00000490689 PHLDB3Q6NSJ2 640 aa13.81□□□□□ -0.2
SHOX2-205ENST00000490689 DTX3LQ8TDB6 740 aa13.81□□□□□ -0.2
SHOX2-205ENST00000490689 GLT8D2Q9H1C3 349 aa13.81□□□□□ -0.2
SHOX2-205ENST00000490689 MYO5BQ9ULV0 1848 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms