RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 UCKL1Q9NWZ5 548 aa5.52□□□□□ -1.53
SMC4-220ENST00000488017 TRAF6Q9Y4K3 522 aa5.52□□□□□ -1.53
SMC4-220ENST00000488017 RPS6KA4O75676 772 aa5.51□□□□□ -1.53
SMC4-220ENST00000488017 FGRP09769 529 aa5.51□□□□□ -1.53
SMC4-220ENST00000488017 PYGMP11217 842 aa5.51□□□□□ -1.53
SMC4-220ENST00000488017 KRT15P19012 456 aa5.51□□□□□ -1.53
SMC4-220ENST00000488017 JAM2P57087 298 aa5.51□□□□□ -1.53
SMC4-220ENST00000488017 SESN2P58004 480 aaPredicted RBP5.51□□□□□ -1.53
SMC4-220ENST00000488017 ST5P78524 1137 aa5.51□□□□□ -1.53
SMC4-220ENST00000488017 PRIMA1Q86XR5 153 aa5.51□□□□□ -1.53
SMC4-220ENST00000488017 GSPT2Q8IYD1 628 aaKnown RBP5.51□□□□□ -1.53
SMC4-220ENST00000488017 ZNF669Q96BR6 464 aaPredicted RBP5.51□□□□□ -1.53
SMC4-220ENST00000488017 CBLCQ9ULV8 474 aa5.51□□□□□ -1.53
SMC4-220ENST00000488017 ARVCFO00192 962 aa5.5□□□□□ -1.53
SMC4-220ENST00000488017 ITGB6P18564 788 aa5.5□□□□□ -1.53
SMC4-220ENST00000488017 RGS19P49795 217 aa5.5□□□□□ -1.53
SMC4-220ENST00000488017 ADCY7P51828 1080 aa5.5□□□□□ -1.53
SMC4-220ENST00000488017 MRPS21P82921 87 aaKnown RBP5.5□□□□□ -1.53
SMC4-220ENST00000488017 LACTBP83111 547 aaPredicted RBP5.5□□□□□ -1.53
SMC4-220ENST00000488017 MAP3K12Q12852 859 aa5.5□□□□□ -1.53
SMC4-220ENST00000488017 SAFB2Q14151 953 aaKnown RBP eCLIP5.5□□□□□ -1.53
SMC4-220ENST00000488017 FAM47CQ5HY64 1035 aa5.5□□□□□ -1.53
SMC4-220ENST00000488017 YOD1Q5VVQ6 348 aaPredicted RBP5.5□□□□□ -1.53
SMC4-220ENST00000488017 SLC25A43Q8WUT9 341 aaPredicted RBP5.5□□□□□ -1.53
SMC4-220ENST00000488017 HNRNPLLQ8WVV9 542 aaKnown RBP5.5□□□□□ -1.53
SMC4-220ENST00000488017 PTPRN2Q92932 1015 aa5.5□□□□□ -1.53
SMC4-220ENST00000488017 SLC6A15Q9H2J7 730 aa5.5□□□□□ -1.53
SMC4-220ENST00000488017 ASB1Q9Y576 335 aa5.5□□□□□ -1.53
SMC4-220ENST00000488017 NUDT3O95989 172 aa5.49□□□□□ -1.53
SMC4-220ENST00000488017 MMEP08473 750 aa5.49□□□□□ -1.53
SMC4-220ENST00000488017 MBNL2Q5VZF2 373 aaKnown RBP5.49□□□□□ -1.53
SMC4-220ENST00000488017 KLHDC10Q6PID8 442 aa5.49□□□□□ -1.53
SMC4-220ENST00000488017 RHOUQ7L0Q8 258 aa5.49□□□□□ -1.53
SMC4-220ENST00000488017 CALML6Q8TD86 181 aa5.49□□□□□ -1.53
SMC4-220ENST00000488017 SLC7A6OSQ96CW6 309 aaPredicted RBP5.49□□□□□ -1.53
SMC4-220ENST00000488017 ZNF764Q96H86 408 aaPredicted RBP5.49□□□□□ -1.53
SMC4-220ENST00000488017 SMURF1Q9HCE7 757 aa5.49□□□□□ -1.53
SMC4-220ENST00000488017 KIAA1522Q9P206 1035 aaPredicted RBP5.49□□□□□ -1.53
SMC4-220ENST00000488017 PACSIN3Q9UKS6 424 aa5.49□□□□□ -1.53
SMC4-220ENST00000488017 XDHP47989 1333 aa5.48□□□□□ -1.53
SMC4-220ENST00000488017 H2AFYO75367 372 aaKnown RBP5.48□□□□□ -1.53
SMC4-220ENST00000488017 APEX1P27695 318 aaKnown RBP5.48□□□□□ -1.53
SMC4-220ENST00000488017 SMAD3P84022 425 aaKnown RBP5.48□□□□□ -1.53
SMC4-220ENST00000488017 ATP2C1P98194 919 aaPredicted RBP5.48□□□□□ -1.53
SMC4-220ENST00000488017 ADAM15Q13444 863 aa5.48□□□□□ -1.53
SMC4-220ENST00000488017 KRTAP5-11Q6L8G4 156 aa5.48□□□□□ -1.53
SMC4-220ENST00000488017 BCL6BQ8N143 479 aaPredicted RBP5.48□□□□□ -1.53
SMC4-220ENST00000488017 ASB15Q8WXK1 588 aa5.48□□□□□ -1.53
SMC4-220ENST00000488017 GPR87Q9BY21 358 aa5.48□□□□□ -1.53
SMC4-220ENST00000488017 PTGFRNQ9P2B2 879 aa5.48□□□□□ -1.53
SMC4-220ENST00000488017 PCDHA8Q9Y5H6 950 aa5.48□□□□□ -1.53
SMC4-220ENST00000488017 PPFIA4O75335 1185 aa5.47□□□□□ -1.53
SMC4-220ENST00000488017 GUCY1A3Q02108 690 aa5.47□□□□□ -1.53
SMC4-220ENST00000488017 SEC23AQ15436 765 aa5.47□□□□□ -1.53
SMC4-220ENST00000488017 ELAVL1Q15717 326 aaKnown RBP5.47□□□□□ -1.53
SMC4-220ENST00000488017 RABL3Q5HYI8 236 aa5.47□□□□□ -1.53
SMC4-220ENST00000488017 FAM111BQ6SJ93 734 aa5.47□□□□□ -1.53
SMC4-220ENST00000488017 ANKS3Q6ZW76 656 aa5.47□□□□□ -1.53
SMC4-220ENST00000488017 HTR3DQ70Z44 454 aa5.47□□□□□ -1.53
SMC4-220ENST00000488017 SYNE4Q8N205 404 aa5.47□□□□□ -1.53
SMC4-220ENST00000488017 GPR150Q8NGU9 434 aa5.47□□□□□ -1.53
SMC4-220ENST00000488017 GFM2Q969S9 779 aaKnown RBP5.47□□□□□ -1.53
SMC4-220ENST00000488017 GBP4Q96PP9 640 aa5.47□□□□□ -1.53
SMC4-220ENST00000488017 KCNH7Q9NS40 1196 aa5.47□□□□□ -1.53
SMC4-220ENST00000488017 CCDC66A2RUB6 948 aa5.46□□□□□ -1.54
SMC4-220ENST00000488017 PRAMEF22A3QJZ6 481 aa5.46□□□□□ -1.54
SMC4-220ENST00000488017 FOXP2O15409 715 aa5.46□□□□□ -1.54
SMC4-220ENST00000488017 ERBB2P04626 1255 aa5.46□□□□□ -1.54
SMC4-220ENST00000488017 SDHAP31040 664 aa5.46□□□□□ -1.54
SMC4-220ENST00000488017 ARID5AQ03989 594 aa5.46□□□□□ -1.54
SMC4-220ENST00000488017 LY6G5CQ5SRR4 150 aa5.46□□□□□ -1.54
SMC4-220ENST00000488017 GAREM2Q75VX8 874 aa5.46□□□□□ -1.54
SMC4-220ENST00000488017 HIPK4Q8NE63 616 aa5.46□□□□□ -1.54
SMC4-220ENST00000488017 RIOX1Q9H6W3 641 aa5.46□□□□□ -1.54
SMC4-220ENST00000488017 TRPS1Q9UHF7 1281 aa5.46□□□□□ -1.54
SMC4-220ENST00000488017 ZNHIT2Q9UHR6 403 aa5.46□□□□□ -1.54
SMC4-220ENST00000488017 KLRG2A4D1S0 409 aaPredicted RBP5.45□□□□□ -1.54
SMC4-220ENST00000488017 GOLGA6L6A8MZA4 724 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 GOLGA6L22H0YM25 854 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 KCNK3O14649 394 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 KLF4O43474 513 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 SRGAP2CP0DJJ0 459 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 ERCC5P28715 1186 aaPredicted RBP5.45□□□□□ -1.54
SMC4-220ENST00000488017 STAT3P40763 770 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 RABGGTBP53611 331 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 KRTAP10-7P60409 375 aaPredicted RBP5.45□□□□□ -1.54
SMC4-220ENST00000488017 SUMO1P63165 101 aaKnown RBP5.45□□□□□ -1.54
SMC4-220ENST00000488017 ADAM8P78325 824 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 PTPAQ15257 358 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 GAGE13Q4V321 117 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 SYCE2Q6PIF2 218 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 MCF2L2Q86YR7 1114 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 NOSTRINQ8IVI9 506 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 ZNF276Q8N554 614 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 THAP3Q8WTV1 239 aaPredicted RBP5.45□□□□□ -1.54
SMC4-220ENST00000488017 GCDHQ92947 438 aaPredicted RBP5.45□□□□□ -1.54
SMC4-220ENST00000488017 GPHA2Q96T91 129 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 SPATA9Q9BWV2 254 aa5.45□□□□□ -1.54
SMC4-220ENST00000488017 SAE1Q9UBE0 346 aaPredicted RBP5.45□□□□□ -1.54
SMC4-220ENST00000488017 FZD1Q9UP38 647 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms