RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 IFIH1Q9BYX4 1025 aaKnown RBP16.51■□□□□ 0.23
USP4-212ENST00000486549 CELF4Q9BZC1 486 aaKnown RBP16.51■□□□□ 0.23
USP4-212ENST00000486549 ZNF576Q9H609 170 aa16.51■□□□□ 0.23
USP4-212ENST00000486549 A0A087WWV3 80 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 LAD1O00515 517 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 STX6O43752 255 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 MED24O75448 989 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 CD52P31358 61 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 PBX2P40425 430 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 FXR2P51116 673 aaKnown RBP eCLIP16.5■□□□□ 0.23
USP4-212ENST00000486549 RABGGTBP53611 331 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 DEFB103AP81534 67 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 RESTQ13127 1097 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 KIZQ2M2Z5 673 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 TSHZ1Q6ZSZ6 1077 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 OTUD6AQ7L8S5 288 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 LINC01465Q8N7H1 131 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 CEP89Q96ST8 783 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 OSMRQ99650 979 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 TTYH1Q9H313 450 aaPredicted RBP16.5■□□□□ 0.23
USP4-212ENST00000486549 LRWD1Q9UFC0 647 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 MTMR6Q9Y217 621 aa16.5■□□□□ 0.23
USP4-212ENST00000486549 MYH15Q9Y2K3 1946 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 ABHD14A-ACY1A0A1B0GW23 586 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 MAFO75444 373 aaPredicted RBP16.49■□□□□ 0.23
USP4-212ENST00000486549 FOSL2P15408 326 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 POLGP54098 1239 aaPredicted RBP16.49■□□□□ 0.23
USP4-212ENST00000486549 ATP2C1P98194 919 aaPredicted RBP16.49■□□□□ 0.23
USP4-212ENST00000486549 DRP2Q13474 957 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 DTHD1Q6ZMT9 781 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 TMCO2Q7Z6W1 182 aaPredicted RBP16.49■□□□□ 0.23
USP4-212ENST00000486549 CATSPER3Q86XQ3 398 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 PHOSPHO2Q8TCD6 241 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 PIGOQ8TEQ8 1089 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 APBB2Q92870 758 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 SCLT1Q96NL6 688 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 SLC9A7Q96T83 725 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 PBX4Q9BYU1 374 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 RAB34Q9BZG1 259 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 AGO3Q9H9G7 860 aaKnown RBP16.49■□□□□ 0.23
USP4-212ENST00000486549 SLC28A3Q9HAS3 691 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 CDHR5Q9HBB8 845 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 TUFT1Q9NNX1 390 aa16.49■□□□□ 0.23
USP4-212ENST00000486549 KDM3AQ9Y4C1 1321 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 PP2D1A8MPX8 630 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 EFCAB14O75071 495 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 LYPLA2O95372 231 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 SPATA31C1P0DKV0 1188 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 CCT6AP40227 531 aaKnown RBP16.48■□□□□ 0.23
USP4-212ENST00000486549 PRPHP41219 470 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 DNM2P50570 870 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 NLRP11P59045 1033 aaKnown RBP16.48■□□□□ 0.23
USP4-212ENST00000486549 PAK2Q13177 524 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 MKRN4PQ13434 485 aaPredicted RBP16.48■□□□□ 0.23
USP4-212ENST00000486549 IL17AQ16552 155 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 FOXD4L5Q5VV16 416 aaPredicted RBP16.48■□□□□ 0.23
USP4-212ENST00000486549 HAUS3Q68CZ6 603 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 FAM117BQ6P1L5 589 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 FAM173BQ6P4H8 233 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 POTEGQ6S5H5 508 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.48■□□□□ 0.23
USP4-212ENST00000486549 FOXD4L4Q8WXT5 416 aaPredicted RBP16.48■□□□□ 0.23
USP4-212ENST00000486549 SLC7A3Q8WY07 619 aa16.48■□□□□ 0.23
USP4-212ENST00000486549 JPH2Q9BR39 696 aaPredicted RBP16.48■□□□□ 0.23
USP4-212ENST00000486549 POLR3CQ9BUI4 534 aaPredicted RBP16.48■□□□□ 0.23
USP4-212ENST00000486549 IGKV6-21A0A0C4DH24 114 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 VWA3AA6NCI4 1184 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 GPR32O75388 356 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 RPS6KA5O75582 802 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 RFC5P40937 340 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 EMC2Q15006 297 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 SF3A1Q15459 793 aaKnown RBP16.47■□□□□ 0.23
USP4-212ENST00000486549 HERC6Q8IVU3 1022 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 MYOCDQ8IZQ8 938 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 IGSF22Q8N9C0 903 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 SNX29Q8TEQ0 813 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 TMEM40Q8WWA1 233 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 NLRP7Q8WX94 980 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 GAS2L1Q99501 681 aaPredicted RBP16.47■□□□□ 0.23
USP4-212ENST00000486549 ANKEF1Q9NU02 776 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 SUCLA2Q9P2R7 463 aaPredicted RBP16.47■□□□□ 0.23
USP4-212ENST00000486549 PADI3Q9ULW8 664 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 NOC2LQ9Y3T9 749 aaKnown RBP16.47■□□□□ 0.23
USP4-212ENST00000486549 PPME1Q9Y570 386 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 PCDHA11Q9Y5I1 949 aa16.47■□□□□ 0.23
USP4-212ENST00000486549 AMHP03971 560 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 MYOGP15173 224 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 RPA1P27694 616 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 CDC25AP30304 524 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 GPC3P51654 580 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 CRYBB1P53674 252 aaPredicted RBP16.46■□□□□ 0.23
USP4-212ENST00000486549 NFX1Q12986 1120 aaKnown RBP16.46■□□□□ 0.23
USP4-212ENST00000486549 PDIA5Q14554 519 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 RHPN2Q8IUC4 686 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 USP38Q8NB14 1042 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 MAFAQ8NHW3 353 aaPredicted RBP16.46■□□□□ 0.23
USP4-212ENST00000486549 TMEM143Q96AN5 459 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 MTRQ99707 1265 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 ZBED2Q9BTP6 218 aa16.46■□□□□ 0.23
USP4-212ENST00000486549 NKX2-4Q9H2Z4 354 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms