RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 GGA3Q9NZ52 723 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 GABBR1Q9UBS5 961 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 NXF1Q9UBU9 619 aaKnown RBP11.9□□□□□ -0.5
HDAC6-228ENST00000486227 DNAJC12Q9UKB3 198 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 MYMKA6NI61 221 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 GCLMP48507 274 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 RNASELQ05823 741 aaKnown RBP11.9□□□□□ -0.5
HDAC6-228ENST00000486227 SLC20A2Q08357 652 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 MTF1Q14872 753 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 PPP2R5EQ16537 467 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 SWSAP1Q6NVH7 229 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 XXYLT1Q8NBI6 393 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 SREK1Q8WXA9 508 aaKnown RBP11.9□□□□□ -0.5
HDAC6-228ENST00000486227 VIPAS39Q9H9C1 493 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 ELP3Q9H9T3 547 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 TYW1Q9NV66 732 aaKnown RBP11.9□□□□□ -0.5
HDAC6-228ENST00000486227 RAB20Q9NX57 234 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 RNF14Q9UBS8 474 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 PARP2Q9UGN5 583 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 ZNF233A6NK53 670 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 TLR3O15455 904 aaKnown RBP11.9□□□□□ -0.5
HDAC6-228ENST00000486227 TBC1D8O95759 1140 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 POLR2BP30876 1174 aaKnown RBP11.9□□□□□ -0.5
HDAC6-228ENST00000486227 ZBTB16Q05516 673 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 CCDC14Q49A88 953 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 AP1ARQ63HQ0 302 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 PPP1R21Q6ZMI0 780 aa11.9□□□□□ -0.5
HDAC6-228ENST00000486227 N4BP2L2Q92802 583 aaPredicted RBP11.9□□□□□ -0.5
HDAC6-228ENST00000486227 BAZ2BQ9UIF8 2168 aaKnown RBP11.9□□□□□ -0.5
HDAC6-228ENST00000486227 THAP12O43422 761 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 SMARCA1P28370 1054 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 ARL1P40616 181 aaPredicted RBP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 ZNF157P51786 506 aaPredicted RBP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 TAF1CQ15572 869 aaPredicted RBP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 PHLDB2Q86SQ0 1253 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 MCPH1Q8NEM0 835 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 NLRP7Q8WX94 980 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 TNPO2O14787 897 aaKnown RBP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 KIF1CO43896 1103 aaKnown RBP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 ABCD1P33897 745 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 HDLBPQ00341 1268 aaKnown RBP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 C2orf54Q08AI8 447 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 EPHA7Q15375 998 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 GIMAP8Q8ND71 665 aaPredicted RBP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 NEK9Q8TD19 979 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 MAGOHBQ96A72 148 aaKnown RBP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 CEP72Q9P209 647 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 NR1D1P20393 614 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 GGCXP38435 758 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 TGFB2P61812 414 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 VSNL1P62760 191 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 MFSD14CQ5VZR4 134 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 DENND2CQ68D51 928 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 CCDC89Q8N998 374 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 UHMK1Q8TAS1 419 aaKnown RBP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 MSTO1Q9BUK6 570 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 SPATS2LQ9NUQ6 558 aaKnown RBP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 STAM2O75886 525 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 RHOBTB3O94955 611 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 EYA4O95677 639 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 ABL1P00519 1130 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 GNAT1P11488 350 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 SEMA3FQ13275 785 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 KAZNQ674X7 775 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 NSMCE1Q8WV22 266 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 HNRNPLLQ8WVV9 542 aaKnown RBP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 C7orf25Q9BPX7 421 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 ACAD9Q9H845 621 aa11.89□□□□□ -0.51
HDAC6-228ENST00000486227 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.89□□□□□ -0.51
HDAC6-228ENST00000486227 A0A1B0GTH6 734 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 DENND3A2RUS2 1198 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 HEXIM1O94992 359 aaKnown RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 CD58P19256 250 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 GUCY2CP25092 1073 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 NMT1P30419 496 aaKnown RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 MAPK4P31152 587 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 ADCY8P40145 1251 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 KIAA1841Q6NSI8 718 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 CEP128Q6ZU80 1094 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 SAMD7Q7Z3H4 446 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 LRP10Q7Z4F1 713 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 COG1Q8WTW3 980 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 ANKRD36BP1Q96IX9 119 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 TACO1Q9BSH4 297 aaKnown RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 ESYT2A0FGR8 921 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 SMIM22K7EJ46 135 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 POLRMTO00411 1230 aaKnown RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 MYL3P08590 195 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 IL1R1P14778 569 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 COL9A3Q14050 684 aaPredicted RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 HADHQ16836 314 aaKnown RBP11.88□□□□□ -0.51
HDAC6-228ENST00000486227 VSIG1Q86XK7 387 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 THNSL1Q8IYQ7 743 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 FBXL16Q8N461 479 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 VCXQ9H320 206 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 ATP6V0A4Q9HBG4 840 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 EPB41L5Q9HCM4 733 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 WDR70Q9NW82 654 aa11.88□□□□□ -0.51
HDAC6-228ENST00000486227 SEL1LQ9UBV2 794 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms