RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 JAG2Q9Y219 1238 aa5.79□□□□□ -1.48
VPS41-213ENST00000485955 NR2E1Q9Y466 385 aa5.79□□□□□ -1.48
VPS41-213ENST00000485955 H7C1D1 291 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 KPNA6O60684 536 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 PRLP01236 227 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 RANGAP1P46060 587 aaPredicted RBP5.78□□□□□ -1.48
VPS41-213ENST00000485955 NEK4P51957 841 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 RAC3P60763 192 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 PUM1Q14671 1186 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS41-213ENST00000485955 PCBP1Q15365 356 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS41-213ENST00000485955 DALRD3Q5D0E6 543 aaKnown RBP5.78□□□□□ -1.48
VPS41-213ENST00000485955 AGBL4Q5VU57 503 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 ESRP1Q6NXG1 681 aaKnown RBP5.78□□□□□ -1.48
VPS41-213ENST00000485955 CNNM4Q6P4Q7 775 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 USP30Q70CQ3 517 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 CFHR4Q92496 578 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 DVL3Q92997 716 aaPredicted RBP5.78□□□□□ -1.48
VPS41-213ENST00000485955 ORAI3Q9BRQ5 295 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 KLC2Q9H0B6 622 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 PCIF1Q9H4Z3 704 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 OXSMQ9NWU1 459 aa5.78□□□□□ -1.48
VPS41-213ENST00000485955 ZNF891A8MT65 544 aaPredicted RBP5.77□□□□□ -1.49
VPS41-213ENST00000485955 ARHGAP6O43182 974 aa5.77□□□□□ -1.49
VPS41-213ENST00000485955 CDC45O75419 566 aa5.77□□□□□ -1.49
VPS41-213ENST00000485955 F2P00734 622 aa5.77□□□□□ -1.49
VPS41-213ENST00000485955 CYP17A1P05093 508 aa5.77□□□□□ -1.49
VPS41-213ENST00000485955 CR2P20023 1033 aa5.77□□□□□ -1.49
VPS41-213ENST00000485955 POU3F2P20265 443 aaPredicted RBP5.77□□□□□ -1.49
VPS41-213ENST00000485955 NFYCQ13952 458 aa5.77□□□□□ -1.49
VPS41-213ENST00000485955 ZNF174Q15697 407 aa5.77□□□□□ -1.49
VPS41-213ENST00000485955 NIM1KQ8IY84 436 aa5.77□□□□□ -1.49
VPS41-213ENST00000485955 GIMAP8Q8ND71 665 aaPredicted RBP5.77□□□□□ -1.49
VPS41-213ENST00000485955 MAML3Q96JK9 1138 aa5.77□□□□□ -1.49
VPS41-213ENST00000485955 DEF6Q9H4E7 631 aa5.77□□□□□ -1.49
VPS41-213ENST00000485955 OAZ3Q9UMX2 235 aa5.77□□□□□ -1.49
VPS41-213ENST00000485955 ZFR2Q9UPR6 939 aaKnown RBP5.77□□□□□ -1.49
VPS41-213ENST00000485955 C1QTNF3-AMACRE9PGA6 284 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 CDC14BO60729 498 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 MAFO75444 373 aaPredicted RBP5.76□□□□□ -1.49
VPS41-213ENST00000485955 DSG1Q02413 1049 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 DUSP8Q13202 625 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 MYBPC3Q14896 1274 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 ACAP1Q15027 740 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 R3HDM1Q15032 1099 aaKnown RBP5.76□□□□□ -1.49
VPS41-213ENST00000485955 ZNF568Q3ZCX4 644 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 RTKN2Q8IZC4 609 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 FUKQ8N0W3 1084 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 OR14K1Q8NGZ2 314 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 TARS2Q9BW92 718 aaKnown RBP5.76□□□□□ -1.49
VPS41-213ENST00000485955 OR10A2Q9H208 303 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 C12orf65Q9H3J6 166 aaKnown RBP5.76□□□□□ -1.49
VPS41-213ENST00000485955 IFT57Q9NWB7 429 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 MYRFQ9Y2G1 1151 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 SPO11Q9Y5K1 396 aa5.76□□□□□ -1.49
VPS41-213ENST00000485955 UBA6A0AVT1 1052 aaPredicted RBP5.75□□□□□ -1.49
VPS41-213ENST00000485955 MEOX1P50221 254 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 ROM1Q03395 351 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 HGFACQ04756 655 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 ADAM15Q13444 863 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 EPHA7Q15375 998 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 SEPT7Q16181 437 aaKnown RBP5.75□□□□□ -1.49
VPS41-213ENST00000485955 SLFN12LQ6IEE8 588 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 SPRED1Q7Z699 444 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 KIAA0907Q7Z7F0 614 aaPredicted RBP5.75□□□□□ -1.49
VPS41-213ENST00000485955 KIF18BQ86Y91 864 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 PALM2Q8IXS6 379 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 CHTF18Q8WVB6 975 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 RTF1Q92541 710 aaKnown RBP5.75□□□□□ -1.49
VPS41-213ENST00000485955 E2F7Q96AV8 911 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 TUBGCP5Q96RT8 1024 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 FEZ1Q99689 392 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 FAM184BQ9ULE4 1060 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 ZKSCAN5Q9Y2L8 839 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 TSC22D4Q9Y3Q8 395 aa5.75□□□□□ -1.49
VPS41-213ENST00000485955 TGM5O43548 720 aa5.74□□□□□ -1.49
VPS41-213ENST00000485955 TTC38Q5R3I4 469 aa5.74□□□□□ -1.49
VPS41-213ENST00000485955 UNQ6494/PRO21346Q6UXR6 183 aa5.74□□□□□ -1.49
VPS41-213ENST00000485955 Q6ZSN1 163 aa5.74□□□□□ -1.49
VPS41-213ENST00000485955 GPR135Q8IZ08 494 aa5.74□□□□□ -1.49
VPS41-213ENST00000485955 PLA2G12BQ9BX93 195 aa5.74□□□□□ -1.49
VPS41-213ENST00000485955 SEMA4AQ9H3S1 761 aa5.74□□□□□ -1.49
VPS41-213ENST00000485955 ZMAT4Q9H898 229 aa5.74□□□□□ -1.49
VPS41-213ENST00000485955 AGO3Q9H9G7 860 aaKnown RBP5.74□□□□□ -1.49
VPS41-213ENST00000485955 TOMM22Q9NS69 142 aa5.74□□□□□ -1.49
VPS41-213ENST00000485955 THG1LQ9NWX6 298 aaKnown RBP5.74□□□□□ -1.49
VPS41-213ENST00000485955 USP35Q9P2H5 1018 aa5.74□□□□□ -1.49
VPS41-213ENST00000485955 PUF60Q9UHX1 559 aaKnown RBP5.74□□□□□ -1.49
VPS41-213ENST00000485955 TBX22Q9Y458 520 aa5.74□□□□□ -1.49
VPS41-213ENST00000485955 CTDP1Q9Y5B0 961 aaPredicted RBP5.74□□□□□ -1.49
VPS41-213ENST00000485955 STAT3P40763 770 aa5.73□□□□□ -1.49
VPS41-213ENST00000485955 SMAD3P84022 425 aaKnown RBP5.73□□□□□ -1.49
VPS41-213ENST00000485955 MAP3K12Q12852 859 aa5.73□□□□□ -1.49
VPS41-213ENST00000485955 PRAMEF9Q5VWM5 478 aa5.73□□□□□ -1.49
VPS41-213ENST00000485955 SH3RF3Q8TEJ3 882 aaPredicted RBP5.73□□□□□ -1.49
VPS41-213ENST00000485955 OR14A2Q96R54 314 aa5.73□□□□□ -1.49
VPS41-213ENST00000485955 POFUT1Q9H488 388 aa5.73□□□□□ -1.49
VPS41-213ENST00000485955 SAE1Q9UBE0 346 aaPredicted RBP5.73□□□□□ -1.49
VPS41-213ENST00000485955 A0A087X0B3 334 aa5.72□□□□□ -1.49
VPS41-213ENST00000485955 C2orf78A6NCI8 922 aa5.72□□□□□ -1.49
VPS41-213ENST00000485955 MATN3O15232 486 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms