RNA–Protein interactions for RNA: ENST00000483956.1

SEC61A1-205, Transcript of Sec61 translocon alpha 1 subunit, humanhuman

TSL 1 (best)

Gene SEC61A1, Length 3,046 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A1-205ENST00000483956 PDLIM1O00151 329 aa12.55□□□□□ -0.4
SEC61A1-205ENST00000483956 MMEP08473 750 aa12.55□□□□□ -0.4
SEC61A1-205ENST00000483956 ECHS1P30084 290 aa12.55□□□□□ -0.4
SEC61A1-205ENST00000483956 KRT71Q3SY84 523 aa12.55□□□□□ -0.4
SEC61A1-205ENST00000483956 DDX42Q86XP3 938 aaKnown RBP eCLIP12.55□□□□□ -0.4
SEC61A1-205ENST00000483956 SLX1AQ9BQ83 275 aa12.55□□□□□ -0.4
SEC61A1-205ENST00000483956 BLOC1S4Q9NUP1 217 aa12.55□□□□□ -0.4
SEC61A1-205ENST00000483956 GOLGA6L10A0A0M3HER8 536 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 HIP1RO75146 1068 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 USP17L8P0C7I0 530 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 GNAZP19086 355 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 ATP6V1C1P21283 382 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 PRDX5P30044 214 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 SLC1A4P43007 532 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 ERVK-9P63128 1117 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 KLC1Q07866 573 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 LETM2Q2VYF4 491 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 PABPC1LQ4VXU2 614 aaKnown RBP12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 C3orf67Q6ZVT6 689 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 CACNA2D4Q7Z3S7 1137 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 PROM2Q8N271 834 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 HPS3Q969F9 1004 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 ANKRD27Q96NW4 1050 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 TSPYL2Q9H2G4 693 aaPredicted RBP12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 PRDM16Q9HAZ2 1276 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 FBXL5Q9UKA1 691 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 PNMA2Q9UL42 364 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 CHN1P15882 459 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 GNA11P29992 359 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 ALDH1B1P30837 517 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 FLT3P36888 993 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 GFPT1Q06210 699 aaPredicted RBP12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 ENOX2Q16206 610 aaKnown RBP12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 OR52E8Q6IFG1 317 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 CLEC4GQ6UXB4 293 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 KLHL7Q8IXQ5 586 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 NAV1Q8NEY1 1877 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 NDNQ99608 321 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 NEUROG2Q9H2A3 272 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 C6orf50Q9HD87 102 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 RIC8AQ9NPQ8 531 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 LUC7LQ9NQ29 371 aaKnown RBP12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 CD2APQ9Y5K6 639 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 ATAD5Q96QE3 1844 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 MYMKA6NI61 221 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 BUB1O43683 1085 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 TECP42680 631 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 NAPAP54920 295 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 RASSF7Q02833 373 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 EHHADHQ08426 723 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 GRB10Q13322 594 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 EIF1ADQ8N9N8 165 aaKnown RBP12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 PROCA1Q8NCQ7 364 aaPredicted RBP12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 UCMAQ8WVF2 138 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 IFT43Q96FT9 208 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 ARHGEF3Q9NR81 526 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 CEP72Q9P209 647 aa12.54□□□□□ -0.4
SEC61A1-205ENST00000483956 KLRK1P26718 216 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 HIBADHP31937 336 aaKnown RBP12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 CD151P48509 253 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 FXR2P51116 673 aaKnown RBP eCLIP12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 RAD23BP54727 409 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 ERFEQ4G0M1 354 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 OPTNQ96CV9 577 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 PNMA3Q9UL41 463 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 SERPING1P05155 500 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 COPS2P61201 443 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 NAB2Q15742 525 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 SLC9C1Q4G0N8 1177 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 LARP4BQ92615 738 aaKnown RBP12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 LRRC45Q96CN5 670 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 MTMR9Q96QG7 549 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 SELENOSQ9BQE4 189 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 TMEM47Q9BQJ4 181 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 CNOT10Q9H9A5 744 aaKnown RBP12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 ZNF510Q9Y2H8 683 aa12.53□□□□□ -0.4
SEC61A1-205ENST00000483956 ESYT2A0FGR8 921 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 USP17L3A6NCW0 530 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 USP17L4A6NCW7 530 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 SART1O43290 800 aaKnown RBP12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 TSPY3P0CV98 308 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 TSPY8P0CW00 308 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 SMARCA1P28370 1054 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 GALNTL6Q49A17 601 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 SPTY2D1Q68D10 685 aaPredicted RBP12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 USP17L1Q7RTZ2 530 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 FBF1Q8TES7 1133 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 ATXN2LQ8WWM7 1075 aaKnown RBP12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 CENPTQ96BT3 561 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 INPP4AQ96PE3 977 aaPredicted RBP12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 PNMA5Q96PV4 448 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 TSG101Q99816 390 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 LRRC27Q9C0I9 530 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 RAB17Q9H0T7 212 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 ISCUQ9H1K1 167 aa12.52□□□□□ -0.4
SEC61A1-205ENST00000483956 COL5A3P25940 1745 aaPredicted RBP12.52□□□□□ -0.41
SEC61A1-205ENST00000483956 LOC102724428A0A0B4J2F2 783 aa12.52□□□□□ -0.41
SEC61A1-205ENST00000483956 RBM47A0AV96 593 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms