RNA–Protein interactions for RNA: ENST00000482878.5

CCDC78-213, Transcript of coiled-coil domain containing 78, humanhuman

TSL 2

Gene CCDC78, Length 3,458 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-213ENST00000482878 CD302Q8IX05 232 aa13.49□□□□□ -0.25
CCDC78-213ENST00000482878 C3orf20Q8ND61 904 aa13.49□□□□□ -0.25
CCDC78-213ENST00000482878 NOP53Q9NZM5 478 aaKnown RBP13.49□□□□□ -0.25
CCDC78-213ENST00000482878 G3BP2Q9UN86 482 aaKnown RBP13.49□□□□□ -0.25
CCDC78-213ENST00000482878 TNRC6CQ9HCJ0 1690 aaKnown RBP13.48□□□□□ -0.25
CCDC78-213ENST00000482878 SLC9A1P19634 815 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 EPS15P42566 896 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 RPS6KA3P51812 740 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 CASP5P51878 434 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 ERVK-9P63128 1117 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 ZNF543Q08ER8 600 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 SLC30A9Q6PML9 568 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 IRF2BP2Q7Z5L9 587 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 WHAMMQ8TF30 809 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 ITFG2Q969R8 447 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 GGA1Q9UJY5 639 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 SMIM24O75264 130 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 ECHS1P30084 290 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 STAT3P40763 770 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 RPS6KA1Q15418 735 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 ARSHQ5FYA8 562 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 DPY19L2P1Q6NXN4 242 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 C15orf52Q6ZUT6 534 aaKnown RBP13.48□□□□□ -0.25
CCDC78-213ENST00000482878 NT5C3AQ9H0P0 336 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 USP17L10C9JJH3 530 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 TNNC1P63316 161 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 GABPAQ06546 454 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 ITGB3BPQ13352 177 aaPredicted RBP13.48□□□□□ -0.25
CCDC78-213ENST00000482878 XRCC4Q13426 336 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 EMC10Q5UCC4 262 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 KIAA0825Q8IV33 1275 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 ZC3H3Q8IXZ2 948 aaKnown RBP13.48□□□□□ -0.25
CCDC78-213ENST00000482878 GGA2Q9UJY4 613 aa13.48□□□□□ -0.25
CCDC78-213ENST00000482878 IGKV6D-41A0A0C4DH26 115 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 USP17L15C9J2P7 530 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 USP17L13C9JLJ4 530 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 USP17L11C9JVI0 530 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 USP17L18D6R9N7 530 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 USP17L22D6RA61 530 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 USP17L17D6RBQ6 530 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 USP17L19D6RCP7 530 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 USP17L20D6RJB6 530 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 MGRN1O60291 552 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 IL1R1P14778 569 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 NR2F2P24468 414 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 USP17L24Q0WX57 530 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 CDCA2Q69YH5 1023 aaPredicted RBP13.47□□□□□ -0.25
CCDC78-213ENST00000482878 USP17L6PQ6QN14 398 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 KCTD1Q719H9 257 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 UBLCP1Q8WVY7 318 aaPredicted RBP13.47□□□□□ -0.25
CCDC78-213ENST00000482878 TAF4BQ92750 862 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 FAM163AQ96GL9 167 aaPredicted RBP13.47□□□□□ -0.25
CCDC78-213ENST00000482878 TSC22D3Q99576 134 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 TAF1DQ9H5J8 278 aaPredicted RBP13.47□□□□□ -0.25
CCDC78-213ENST00000482878 PSTPIP2Q9H939 334 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 DBNDD1Q9H9R9 158 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 KDM3AQ9Y4C1 1321 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 SBF2Q86WG5 1849 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 GAKO14976 1311 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 MED24O75448 989 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 CTNNA1P35221 906 aaKnown RBP13.47□□□□□ -0.25
CCDC78-213ENST00000482878 HSPA9P38646 679 aaKnown RBP13.47□□□□□ -0.25
CCDC78-213ENST00000482878 PPP1R18Q6NYC8 613 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 MIS18BP1Q6P0N0 1132 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 DDX42Q86XP3 938 aaKnown RBP eCLIP13.47□□□□□ -0.25
CCDC78-213ENST00000482878 ANKS4BQ8N8V4 417 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 HDAC9Q9UKV0 1011 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 NOVA2Q9UNW9 492 aaKnown RBP13.47□□□□□ -0.25
CCDC78-213ENST00000482878 STK38LQ9Y2H1 464 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 COL24A1Q17RW2 1714 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 PLIN4Q96Q06 1357 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 AFF2P51816 1311 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 POTEFA5A3E0 1075 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 CETN3O15182 167 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 POTEIP0CG38 1075 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 UCHL3P15374 230 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 USP11P51784 963 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 POTEGQ6S5H5 508 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 POTEEQ6S8J3 1075 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 MAEAQ7L5Y9 396 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 KCNV2Q8TDN2 545 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 AP1M1Q9BXS5 423 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 ISCUQ9H1K1 167 aa13.47□□□□□ -0.25
CCDC78-213ENST00000482878 CEP104O60308 925 aa13.46□□□□□ -0.25
CCDC78-213ENST00000482878 CLSTN1O94985 981 aa13.46□□□□□ -0.25
CCDC78-213ENST00000482878 TTLL1O95922 423 aa13.46□□□□□ -0.25
CCDC78-213ENST00000482878 KRT18P05783 430 aaKnown RBP13.46□□□□□ -0.25
CCDC78-213ENST00000482878 RANBP1P43487 201 aa13.46□□□□□ -0.25
CCDC78-213ENST00000482878 LRRC57Q8N9N7 239 aa13.46□□□□□ -0.25
CCDC78-213ENST00000482878 CCDC197Q8NCU1 140 aa13.46□□□□□ -0.25
CCDC78-213ENST00000482878 RBM46Q8TBY0 533 aaKnown RBP13.46□□□□□ -0.25
CCDC78-213ENST00000482878 SCFD2Q8WU76 684 aa13.46□□□□□ -0.25
CCDC78-213ENST00000482878 ATF5Q9Y2D1 282 aaPredicted RBP13.46□□□□□ -0.25
CCDC78-213ENST00000482878 DAGLAQ9Y4D2 1042 aa13.46□□□□□ -0.25
CCDC78-213ENST00000482878 NRAPQ86VF7 1730 aa13.46□□□□□ -0.25
CCDC78-213ENST00000482878 SLC12A3P55017 1021 aa13.46□□□□□ -0.26
CCDC78-213ENST00000482878 EDRF1Q3B7T1 1238 aa13.46□□□□□ -0.26
CCDC78-213ENST00000482878 AGAP11Q8TF27 550 aa13.46□□□□□ -0.26
CCDC78-213ENST00000482878 RAPGEF5Q92565 580 aa13.46□□□□□ -0.26
CCDC78-213ENST00000482878 NEUROG2Q9H2A3 272 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms