RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 IFNB1P01574 187 aa15.81■□□□□ 0.12
HDAC6-220ENST00000477528 KRT15P19012 456 aa15.81■□□□□ 0.12
HDAC6-220ENST00000477528 SOX5P35711 763 aa15.81■□□□□ 0.12
HDAC6-220ENST00000477528 GGCXP38435 758 aa15.81■□□□□ 0.12
HDAC6-220ENST00000477528 NFIAQ12857 509 aa15.81■□□□□ 0.12
HDAC6-220ENST00000477528 TFDP1Q14186 410 aa15.81■□□□□ 0.12
HDAC6-220ENST00000477528 SGO2Q562F6 1265 aa15.81■□□□□ 0.12
HDAC6-220ENST00000477528 CENPPQ6IPU0 288 aa15.81■□□□□ 0.12
HDAC6-220ENST00000477528 FAM151AQ8WW52 585 aa15.81■□□□□ 0.12
HDAC6-220ENST00000477528 SREK1Q8WXA9 508 aaKnown RBP15.81■□□□□ 0.12
HDAC6-220ENST00000477528 SYN2Q92777 582 aaPredicted RBP15.81■□□□□ 0.12
HDAC6-220ENST00000477528 DCPSQ96C86 337 aaKnown RBP15.81■□□□□ 0.12
HDAC6-220ENST00000477528 FMO2Q99518 471 aa15.81■□□□□ 0.12
HDAC6-220ENST00000477528 MRPL47Q9HD33 250 aaKnown RBP15.81■□□□□ 0.12
HDAC6-220ENST00000477528 ZNF185O15231 689 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 H2AFXP16104 143 aaPredicted RBP15.8■□□□□ 0.12
HDAC6-220ENST00000477528 PSMC5P62195 406 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 LACTBP83111 547 aaPredicted RBP15.8■□□□□ 0.12
HDAC6-220ENST00000477528 UHMK1Q8TAS1 419 aaKnown RBP15.8■□□□□ 0.12
HDAC6-220ENST00000477528 PLCD4Q9BRC7 762 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 FGRP09769 529 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 UCHL3P15374 230 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 BMP6P22004 513 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 GPC5P78333 572 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 LMNB2Q03252 620 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 GKAP1Q5VSY0 366 aaPredicted RBP15.8■□□□□ 0.12
HDAC6-220ENST00000477528 C15orf52Q6ZUT6 534 aaKnown RBP15.8■□□□□ 0.12
HDAC6-220ENST00000477528 TRIM6Q9C030 488 aaPredicted RBP15.8■□□□□ 0.12
HDAC6-220ENST00000477528 VPS37BQ9H9H4 285 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 RNF146Q9NTX7 359 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 TRIM49P0CI25 452 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 TRIM49CP0CI26 452 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 ARHGAP27Q6ZUM4 889 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 CATSPER3Q86XQ3 398 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 P3H4Q92791 437 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 TRIM7Q9C029 511 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 VCPKMTQ9H867 229 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 HMGB1P1B2RPK0 211 aaPredicted RBP15.8■□□□□ 0.12
HDAC6-220ENST00000477528 CYTH3O43739 400 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 SLFN12LQ6IEE8 588 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 EXOC8Q8IYI6 725 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 NSUN6Q8TEA1 469 aaKnown RBP15.8■□□□□ 0.12
HDAC6-220ENST00000477528 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.8■□□□□ 0.126e-7■■□□□ 14.2
HDAC6-220ENST00000477528 SYNGAP1Q96PV0 1343 aa15.8■□□□□ 0.12
HDAC6-220ENST00000477528 MYBP10242 640 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 GTF2A1P52655 376 aaPredicted RBP15.79■□□□□ 0.12
HDAC6-220ENST00000477528 KCTD2Q14681 263 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 CCDC63Q8NA47 563 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 SEMA6BQ9H3T3 888 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 VIPAS39Q9H9C1 493 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 ATP6V0A4Q9HBG4 840 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 ST7Q9NRC1 585 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 TXNDC16Q9P2K2 825 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 ZNF70Q9UC06 446 aaPredicted RBP15.79■□□□□ 0.12
HDAC6-220ENST00000477528 K7ERI5 159 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 NR1D1P20393 614 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 EIF3BP55884 814 aaKnown RBP15.79■□□□□ 0.12
HDAC6-220ENST00000477528 CDK17Q00537 523 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 POLR3CQ9BUI4 534 aaPredicted RBP15.79■□□□□ 0.12
HDAC6-220ENST00000477528 KIAA1586Q9HCI6 787 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 CYP11B2P19099 503 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 HSPA1LP34931 641 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 RWDD2BP57060 319 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 TRIM65Q6PJ69 517 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 CEP57Q86XR8 500 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 GLYCTKQ8IVS8 523 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 SYT2Q8N9I0 419 aaPredicted RBP15.79■□□□□ 0.12
HDAC6-220ENST00000477528 FBF1Q8TES7 1133 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 RSAD2Q8WXG1 361 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 PACSIN2Q9UNF0 486 aaPredicted RBP15.79■□□□□ 0.12
HDAC6-220ENST00000477528 ZNF148Q9UQR1 794 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 RRP15Q9Y3B9 282 aaKnown RBP15.79■□□□□ 0.12
HDAC6-220ENST00000477528 HNRNPH2P55795 449 aaKnown RBP15.79■□□□□ 0.12
HDAC6-220ENST00000477528 SLMAPQ14BN4 828 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 HHATQ5VTY9 493 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 RSBN1LQ6PCB5 846 aaPredicted RBP15.79■□□□□ 0.12
HDAC6-220ENST00000477528 HNRNPLLQ8WVV9 542 aaKnown RBP15.79■□□□□ 0.12
HDAC6-220ENST00000477528 RFFLQ8WZ73 363 aa15.79■□□□□ 0.12
HDAC6-220ENST00000477528 STX2P32856 288 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 BFSP1Q12934 665 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 FYB2Q5VWT5 728 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 SNRNP48Q6IEG0 339 aaKnown RBP15.78■□□□□ 0.12
HDAC6-220ENST00000477528 RPUSD2Q8IZ73 545 aaKnown RBP15.78■□□□□ 0.12
HDAC6-220ENST00000477528 ANKRD42Q8N9B4 389 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 LRRC1Q9BTT6 524 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 MIS12Q9H081 205 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 DENND3A2RUS2 1198 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 HAUS6Q7Z4H7 955 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 MGARPQ8TDB4 240 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 ZNRF3Q9ULT6 936 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 EIF3DO15371 548 aaKnown RBP eCLIP15.78■□□□□ 0.12
HDAC6-220ENST00000477528 LDHAP00338 332 aaKnown RBP15.78■□□□□ 0.12
HDAC6-220ENST00000477528 SPP2Q13103 211 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 ACTN1P12814 892 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 PMS1P54277 932 aaKnown RBP15.78■□□□□ 0.12
HDAC6-220ENST00000477528 FUT2Q10981 343 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 NOA1Q8NC60 698 aaKnown RBP15.78■□□□□ 0.12
HDAC6-220ENST00000477528 LPAR1Q92633 364 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 ADPGKQ9BRR6 497 aa15.78■□□□□ 0.12
HDAC6-220ENST00000477528 TIPINQ9BVW5 301 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms