RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 PPFIA1Q13136 1202 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 TMCO4Q5TGY1 634 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 TMED8Q6PL24 325 aaPredicted RBP5.42□□□□□ -1.54
CCDC39-204ENST00000476379 PPP1R21Q6ZMI0 780 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 FBXO33Q7Z6M2 555 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 PRPF38AQ8NAV1 312 aaKnown RBP5.42□□□□□ -1.54
CCDC39-204ENST00000476379 KIAA0895Q8NCT3 520 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 ERMNQ8TAM6 284 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 ACER1Q8TDN7 264 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 PPM1EQ8WY54 764 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 KLF6Q99612 283 aaPredicted RBP5.42□□□□□ -1.54
CCDC39-204ENST00000476379 RIOK1Q9BRS2 568 aaKnown RBP5.42□□□□□ -1.54
CCDC39-204ENST00000476379 PI4K2AQ9BTU6 479 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 AGXT2Q9BYV1 514 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 SYNCQ9H7C4 482 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 SERPINB13Q9UIV8 391 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 ZNRF3Q9ULT6 936 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 ABT1Q9ULW3 272 aaKnown RBP5.42□□□□□ -1.54
CCDC39-204ENST00000476379 CSDE1O75534 798 aaKnown RBP5.42□□□□□ -1.54
CCDC39-204ENST00000476379 KRT19P08727 400 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 H2AFZP0C0S5 128 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 CD19P15391 556 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 TNNI1P19237 187 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 FKBP3Q00688 224 aaKnown RBP5.42□□□□□ -1.54
CCDC39-204ENST00000476379 MDM2Q00987 491 aaPredicted RBP5.42□□□□□ -1.54
CCDC39-204ENST00000476379 TRIM14Q14142 442 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 SEC23AQ15436 765 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 CCDC6Q16204 474 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 CDC37Q16543 378 aaPredicted RBP5.42□□□□□ -1.54
CCDC39-204ENST00000476379 H2AFVQ71UI9 128 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 CYFIP1Q7L576 1253 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 CCDC63Q8NA47 563 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 PURBQ96QR8 312 aaKnown RBP5.42□□□□□ -1.54
CCDC39-204ENST00000476379 BPIFA3Q9BQP9 254 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 RNF19AQ9NV58 838 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 SALL4Q9UJQ4 1053 aa5.42□□□□□ -1.54
CCDC39-204ENST00000476379 COL22A1Q8NFW1 1626 aaPredicted RBP5.41□□□□□ -1.54
CCDC39-204ENST00000476379 KAT6AQ92794 2004 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 PI4K2BG5E9Z4 385 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 RGS16O15492 202 aaPredicted RBP5.41□□□□□ -1.54
CCDC39-204ENST00000476379 KRT15P19012 456 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 ARHGAP25P42331 645 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 ZNF131P52739 623 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 PTK2Q05397 1052 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 QRICH1Q2TAL8 776 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 DENND2CQ68D51 928 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 IL31Q6EBC2 164 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 PODNQ7Z5L7 613 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 CRAMP1Q96RY5 1269 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 ATP8A2Q9NTI2 1148 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 PNMA2Q9UL42 364 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 G3BP2Q9UN86 482 aaKnown RBP5.41□□□□□ -1.54
CCDC39-204ENST00000476379 MYH10P35580 1976 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 ABCB11O95342 1321 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 SPAG7O75391 227 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 NEBLO76041 1014 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 ZRANB2O95218 330 aaKnown RBP eCLIP5.41□□□□□ -1.54
CCDC39-204ENST00000476379 EEF1GP26641 437 aaKnown RBP5.41□□□□□ -1.54
CCDC39-204ENST00000476379 IRAK1P51617 712 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 CASP5P51878 434 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 ZBTB16Q05516 673 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 CALCOCO2Q13137 446 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 HIPK4Q8NE63 616 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 LRRN4Q8WUT4 740 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 ATG4AQ8WYN0 398 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 PWWP2AQ96N64 755 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 WRNIP1Q96S55 665 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 POP1Q99575 1024 aaKnown RBP5.41□□□□□ -1.54
CCDC39-204ENST00000476379 PLA2G12BQ9BX93 195 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 DEFB129Q9H1M3 183 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 ALDH8A1Q9H2A2 487 aaPredicted RBP5.41□□□□□ -1.54
CCDC39-204ENST00000476379 VPS37BQ9H9H4 285 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 ELP3Q9H9T3 547 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 HAUS2Q9NVX0 235 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 AMFRQ9UKV5 643 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 FAM184BQ9ULE4 1060 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 RABGAP1Q9Y3P9 1069 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 TTLL3Q9Y4R7 772 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 KNL1Q8NG31 2342 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 FLOT1O75955 427 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 RASA1P20936 1047 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 MARK3P27448 753 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 MAP2K2P36507 400 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 PSMC4P43686 418 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 MXRA7P84157 204 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 PPP2R5CQ13362 524 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 RRP1BQ14684 758 aaKnown RBP5.41□□□□□ -1.54
CCDC39-204ENST00000476379 DACT2Q5SW24 774 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 LRCH2Q5VUJ6 765 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 LLGL2Q6P1M3 1020 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 PDXDC2PQ6P474 469 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 WDR59Q6PJI9 974 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 RSRC2Q7L4I2 434 aaKnown RBP5.41□□□□□ -1.54
CCDC39-204ENST00000476379 TADA2BQ86TJ2 420 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 FAM186BQ8IYM0 893 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 FBF1Q8TES7 1133 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 ANO3Q9BYT9 981 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 GPBP1L1Q9HC44 474 aaPredicted RBP5.41□□□□□ -1.54
CCDC39-204ENST00000476379 MYOZ2Q9NPC6 264 aa5.41□□□□□ -1.54
CCDC39-204ENST00000476379 GPRC5CQ9NQ84 441 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms