RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 EYA4O95677 639 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 UCHL3P15374 230 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 SMARCA1P28370 1054 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 PSMC2P35998 433 aaKnown RBP14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 DLG4P78352 724 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 PEX26Q7Z412 305 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 SULF1Q8IWU6 871 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 SYT2Q8N9I0 419 aaPredicted RBP14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 SALL4Q9UJQ4 1053 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 EMSYQ7Z589 1322 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 MYL7Q01449 175 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 DRAP1Q14919 205 aaPredicted RBP14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 PASD1Q8IV76 773 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 LRRC1Q9BTT6 524 aa14.99□□□□□ -0.01
CCDC88A-211ENST00000471947 A0A1W2PQC6 194 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 HMGB2P26583 209 aaKnown RBP14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 YWHABP31946 246 aaKnown RBP14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 PPP1R2P41236 205 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 ACOT2P49753 483 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 HDLBPQ00341 1268 aaKnown RBP14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 CETN1Q12798 172 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 MESDQ14696 234 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 UGCGQ16739 394 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 CCDC25Q86WR0 208 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 RETREG2Q8NC44 543 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 C7orf43Q8WVR3 580 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 RABGGTAQ92696 567 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 MKL1Q969V6 931 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 FAN1Q9Y2M0 1017 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 DENND3A2RUS2 1198 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 NR3C2P08235 984 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 FAM160B2Q86V87 743 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 SYTL5Q8TDW5 730 aaPredicted RBP14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 RNF19AQ9NV58 838 aa14.98□□□□□ -0.01
CCDC88A-211ENST00000471947 TLDC2A0PJX2 215 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 PSMD2Q13200 908 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 HAUS6Q7Z4H7 955 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 TRIM58Q8NG06 486 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 SLC30A5Q8TAD4 765 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 MXRA8Q9BRK3 442 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 FAM213AQ9BRX8 229 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 KMT5AQ9NQR1 393 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 POLGP54098 1239 aaPredicted RBP14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 RPS6KA1Q15418 735 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 LENG9Q96B70 501 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 NFKBIEO00221 500 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 QARSP47897 775 aaKnown RBP14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 CLK2P49760 499 aaKnown RBP14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 TKFCQ3LXA3 575 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 ODF2Q5BJF6 829 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 TRIM50Q86XT4 487 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 CBWD2Q8IUF1 395 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 FNBP1Q96RU3 617 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 DNAJC7Q99615 494 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 CSADQ9Y600 493 aa14.97□□□□□ -0.01
CCDC88A-211ENST00000471947 ZEB2O60315 1214 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 ATP1A2P50993 1020 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 DDX42Q86XP3 938 aaKnown RBP eCLIP14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 GMCL1P1Q8NEA9 526 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 EPB41L5Q9HCM4 733 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 DNAJC17Q9NVM6 304 aaKnown RBP14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 DMGDHQ9UI17 866 aaKnown RBP14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 MYO3BQ8WXR4 1341 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 NOP56O00567 594 aaKnown RBP14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 EIF3JO75822 258 aaKnown RBP14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 HPDP32754 393 aaPredicted RBP14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 SMTNP53814 917 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 TRAF1Q13077 416 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 FAM182AQ5T1J6 154 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 BTBD6Q96KE9 485 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 PLAGL2Q9UPG8 496 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 ITIH6Q6UXX5 1313 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 KRT19P08727 400 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 H2AFZP0C0S5 128 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 CAPN2P17655 700 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 CD58P19256 250 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 CKAP4Q07065 602 aaKnown RBP14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 DCAF15Q66K64 600 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 H2AFVQ71UI9 128 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 MCF2L2Q86YR7 1114 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 BBXQ8WY36 941 aaPredicted RBP14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 MRRFQ96E11 262 aaKnown RBP14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 FAM118BQ9BPY3 351 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 TYW1Q9NV66 732 aaKnown RBP14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 SIK3Q9Y2K2 1263 aa14.96□□□□□ -0.01
CCDC88A-211ENST00000471947 CBWD6Q4V339 395 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 CBWD3Q5JTY5 395 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 CBWD5Q5RIA9 395 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 SCARA5Q6ZMJ2 495 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 ZNF280CQ8ND82 737 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 DHX38Q92620 1227 aaKnown RBP14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 ERGIC2Q96RQ1 377 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 DDX47Q9H0S4 455 aaKnown RBP14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 OSGEPQ9NPF4 335 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 EIF3CLB5ME19 914 aaKnown RBP14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 ITGB3BPQ13352 177 aaPredicted RBP14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 OSBPL9Q96SU4 736 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 EIF3CQ99613 913 aaKnown RBP14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 PTPN22Q9Y2R2 807 aa14.95□□□□□ -0.02
CCDC88A-211ENST00000471947 ZNF541Q9H0D2 1346 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms