RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 AMNQ9BXJ7 453 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 ZMYND12Q9H0C1 365 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 KANSL3Q9P2N6 904 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 SLC45A1Q9Y2W3 748 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 BAZ2BQ9UIF8 2168 aaKnown RBP5.41□□□□□ -1.54
SF3B1-208ENST00000470268 WDR33Q9C0J8 1336 aaKnown RBP5.41□□□□□ -1.54
SF3B1-208ENST00000470268 SMCO2A6NFE2 343 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 NFIBO00712 420 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 ATP2A1O14983 1001 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 ZBED4O75132 1171 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 NAPAP54920 295 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 C1QTNF8P60827 252 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 GPLD1P80108 840 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 NOGQ13253 232 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 MUM1L1Q5H9M0 696 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 PEAR1Q5VY43 1037 aaPredicted RBP5.41□□□□□ -1.54
SF3B1-208ENST00000470268 SNRNP48Q6IEG0 339 aaKnown RBP5.41□□□□□ -1.54
SF3B1-208ENST00000470268 DIS3L2Q8IYB7 885 aaKnown RBP5.41□□□□□ -1.54
SF3B1-208ENST00000470268 ANKRD13CQ8N6S4 541 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 RASGRP4Q8TDF6 673 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 CLEC4DQ8WXI8 215 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 WASF1Q92558 559 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 TNPO1Q92973 898 aaKnown RBP5.41□□□□□ -1.54
SF3B1-208ENST00000470268 TNFRSF25Q93038 417 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 PAGR1Q9BTK6 254 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 HOMER2Q9NSB8 354 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 FAM8A1Q9UBU6 413 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 CCPG1Q9ULG6 757 aa5.41□□□□□ -1.54
SF3B1-208ENST00000470268 ADGRA2Q96PE1 1338 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 A0A1W2PP55 124 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 ESYT2A0FGR8 921 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 C9orf172C9J069 976 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 H3BQV1 296 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 MEIS2O14770 477 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 EDIL3O43854 480 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 GADD45BO75293 160 aaPredicted RBP5.4□□□□□ -1.54
SF3B1-208ENST00000470268 H2AFB1P0C5Y9 115 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 H2AFB2P0C5Z0 115 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 ZSCAN22P10073 491 aaPredicted RBP5.4□□□□□ -1.54
SF3B1-208ENST00000470268 ALAS1P13196 640 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 PDCP20941 246 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 STAT3P40763 770 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 OAZ1P54368 228 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 INHBEP58166 350 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 NLRP5P59047 1200 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 RESTQ13127 1097 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 PABPC4Q13310 644 aaKnown RBP eCLIP5.4□□□□□ -1.54
SF3B1-208ENST00000470268 PLS1Q14651 629 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 UBE2SQ16763 222 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 USP17L6PQ6QN14 398 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 RAB44Q7Z6P3 723 aaPredicted RBP5.4□□□□□ -1.54
SF3B1-208ENST00000470268 SMCR8Q8TEV9 937 aaPredicted RBP5.4□□□□□ -1.54
SF3B1-208ENST00000470268 PGBD1Q96JS3 809 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 MOV10L1Q9BXT6 1211 aaKnown RBP5.4□□□□□ -1.54
SF3B1-208ENST00000470268 TEX13BQ9BXU2 312 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 BCO2Q9BYV7 579 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 SPATC1LQ9H0A9 340 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 PORCNQ9H237 461 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 SH3GLB2Q9NR46 395 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 METTL5Q9NRN9 209 aaKnown RBP5.4□□□□□ -1.54
SF3B1-208ENST00000470268 TMEM260Q9NX78 707 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 PARP14Q460N5 1801 aa5.4□□□□□ -1.54
SF3B1-208ENST00000470268 A0A0G2JMZ2 1700 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 hCG_1984214I3L0E3 225 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 M0R082 166 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 F13A1P00488 732 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 CTSHP09668 335 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 HSPA6P17066 643 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 U2AF2P26368 475 aaKnown RBP eCLIP5.4□□□□□ -1.552e-11■■■■■ 57.1
SF3B1-208ENST00000470268 HOXA13P31271 388 aaPredicted RBP5.4□□□□□ -1.55
SF3B1-208ENST00000470268 ERVK-24P63145 666 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 CAP1Q01518 475 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 SREBF2Q12772 1141 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 CRHR2Q13324 411 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 TAF1CQ15572 869 aaPredicted RBP5.4□□□□□ -1.55
SF3B1-208ENST00000470268 FOXD4L6Q3SYB3 417 aaPredicted RBP5.4□□□□□ -1.55
SF3B1-208ENST00000470268 COL13A1Q5TAT6 717 aaPredicted RBP5.4□□□□□ -1.55
SF3B1-208ENST00000470268 MCTP1Q6DN14 999 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 FOXD4L3Q6VB84 417 aaPredicted RBP5.4□□□□□ -1.55
SF3B1-208ENST00000470268 NCAPG2Q86XI2 1143 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 RIOX2Q8IUF8 465 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 BLIDQ8IZY5 108 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 ZNF713Q8N859 430 aaPredicted RBP5.4□□□□□ -1.55
SF3B1-208ENST00000470268 MB21D1Q8N884 522 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 CEP120Q8N960 986 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 TMEM87AQ8NBN3 555 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 DAGLBQ8NCG7 672 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 ZNF417Q8TAU3 575 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 ZNF587Q96SQ5 575 aaPredicted RBP5.4□□□□□ -1.55
SF3B1-208ENST00000470268 PARK7Q99497 189 aaKnown RBP5.4□□□□□ -1.55
SF3B1-208ENST00000470268 PSTPIP2Q9H939 334 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 ZCCHC17Q9NP64 241 aaKnown RBP5.4□□□□□ -1.55
SF3B1-208ENST00000470268 RIC8AQ9NPQ8 531 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 RNF146Q9NTX7 359 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 CHMP5Q9NZZ3 219 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 COL20A1Q9P218 1284 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 CPA4Q9UI42 421 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 PCDHA6Q9UN73 950 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 PCDHA4Q9UN74 947 aa5.4□□□□□ -1.55
SF3B1-208ENST00000470268 RABGAP1Q9Y3P9 1069 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms