RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 DHX33Q9H6R0 707 aaKnown RBP16.48■□□□□ 0.23
COL9A3-209ENST00000469852 POLD4Q9HCU8 107 aa16.48■□□□□ 0.23
COL9A3-209ENST00000469852 PDLIM7Q9NR12 457 aa16.48■□□□□ 0.23
COL9A3-209ENST00000469852 FAM13BQ9NYF5 915 aa16.48■□□□□ 0.23
COL9A3-209ENST00000469852 CCDC39Q9UFE4 941 aa16.48■□□□□ 0.23
COL9A3-209ENST00000469852 MROH7Q68CQ1 1323 aa16.47■□□□□ 0.23
COL9A3-209ENST00000469852 ARHGEF35A5YM69 484 aa16.47■□□□□ 0.23
COL9A3-209ENST00000469852 POLR2DO15514 142 aaKnown RBP16.47■□□□□ 0.23
COL9A3-209ENST00000469852 PRPF40AO75400 957 aaKnown RBP16.47■□□□□ 0.23
COL9A3-209ENST00000469852 SSBP05455 408 aaKnown RBP eCLIP16.47■□□□□ 0.23
COL9A3-209ENST00000469852 STAT6P42226 847 aa16.47■□□□□ 0.23
COL9A3-209ENST00000469852 TBC1D8BQ0IIM8 1120 aa16.47■□□□□ 0.23
COL9A3-209ENST00000469852 EMC2Q15006 297 aa16.47■□□□□ 0.23
COL9A3-209ENST00000469852 PADI6Q6TGC4 694 aa16.47■□□□□ 0.23
COL9A3-209ENST00000469852 SYT2Q8N9I0 419 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-209ENST00000469852 LARP4BQ92615 738 aaKnown RBP16.47■□□□□ 0.23
COL9A3-209ENST00000469852 FAM49AQ9H0Q0 323 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-209ENST00000469852 KCNH3Q9ULD8 1083 aa16.47■□□□□ 0.23
COL9A3-209ENST00000469852 PCDHA2Q9Y5H9 948 aa16.47■□□□□ 0.23
COL9A3-209ENST00000469852 UMODL1Q5DID0 1318 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 NPHP3-ACAD11A0A0J9YXS1 232 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 TRIM43BA6NCK2 446 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 DCDC2CA8MYV0 355 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 TLR3O15455 904 aaKnown RBP16.46■□□□□ 0.23
COL9A3-209ENST00000469852 GNAT1P11488 350 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 LIG1P18858 919 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 POLGP54098 1239 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-209ENST00000469852 PTK7Q13308 1070 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 ARSHQ5FYA8 562 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 RINT1Q6NUQ1 792 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 EFCAB12Q6NXP0 572 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 CCDC73Q6ZRK6 1079 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 C7orf61Q8IZ16 206 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 KIAA0319LQ8IZA0 1049 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 DNAJB3Q8WWF6 145 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 TMEM143Q96AN5 459 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 TRIM43Q96BQ3 446 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-209ENST00000469852 CCDC43Q96MW1 224 aaKnown RBP16.46■□□□□ 0.23
COL9A3-209ENST00000469852 MTRQ99707 1265 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 SUGCTQ9HAC7 445 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 GPRC5CQ9NQ84 441 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 LMBRD1Q9NUN5 540 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 STK17AQ9UEE5 414 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 SERTAD1Q9UHV2 236 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 TBX21Q9UL17 535 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 NOD1Q9Y239 953 aa16.46■□□□□ 0.23
COL9A3-209ENST00000469852 SMIM35A0A1B0GVV1 85 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 GOLGA6L4A6NEF3 574 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 ACTN4O43707 911 aaKnown RBP16.45■□□□□ 0.22
COL9A3-209ENST00000469852 CLTBP09497 229 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 ITGB8P26012 769 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 RFC5P40937 340 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 CACNB1Q02641 598 aaPredicted RBP16.45■□□□□ 0.22
COL9A3-209ENST00000469852 RAD51AP2Q09MP3 1159 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 TMEM62Q0P6H9 643 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 CSPP1Q1MSJ5 1256 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 C1orf186Q6ZWK4 172 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 MAEAQ7L5Y9 396 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 KCTD17Q8N5Z5 321 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 METTL13Q8N6R0 699 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 ENGASEQ8NFI3 743 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 STAMQ92783 540 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 GBP4Q96PP9 640 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 HTATIP2Q9BUP3 242 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 TANC1Q9C0D5 1861 aa16.45■□□□□ 0.22
COL9A3-209ENST00000469852 MAGEB2O15479 319 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 DGAT1O75907 488 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 VTNP04004 478 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 CYP11B2P19099 503 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 SNW1Q13573 536 aaKnown RBP16.44■□□□□ 0.22
COL9A3-209ENST00000469852 LONRF3Q496Y0 759 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 TRAF7Q6Q0C0 670 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 CHRDL2Q6WN34 429 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 GPBP1Q86WP2 473 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 GRAMD1CQ8IYS0 662 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 FMR1NBQ8N0W7 255 aaPredicted RBP16.44■□□□□ 0.22
COL9A3-209ENST00000469852 DAW1Q8N136 415 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 SLC7A3Q8WY07 619 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 DPF3Q92784 378 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 ZNF668Q96K58 619 aaPredicted RBP16.44■□□□□ 0.22
COL9A3-209ENST00000469852 PPP1R16BQ96T49 567 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 NOC4LQ9BVI4 516 aaKnown RBP16.44■□□□□ 0.22
COL9A3-209ENST00000469852 OSBPL7Q9BZF2 842 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 PPP1R12CQ9BZL4 782 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 ATP6V0A4Q9HBG4 840 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 PRDM5Q9NQX1 630 aaPredicted RBP16.44■□□□□ 0.22
COL9A3-209ENST00000469852 TMEM39AQ9NV64 488 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 PPME1Q9Y570 386 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 LTBP2Q14767 1821 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 TRIOBPQ9H2D6 2365 aa16.44■□□□□ 0.22
COL9A3-209ENST00000469852 SCN5AQ14524 2016 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 SZT2Q5T011 3432 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 MYMKA6NI61 221 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 NR1I2O75469 434 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 CTSHP09668 335 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 CKBP12277 381 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 CASP1P29466 404 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 SYKP43405 635 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 UBE2HP62256 183 aa16.43■□□□□ 0.22
COL9A3-209ENST00000469852 MAPK7Q13164 816 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms