RNA–Protein interactions for RNA: ENST00000468872.5

LSM5-209, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 636 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-209ENST00000468872 APOBEC2Q9Y235 224 aaKnown RBP6.99□□□□□ -1.29
LSM5-209ENST00000468872 MAN2B1O00754 1011 aa6.98□□□□□ -1.29
LSM5-209ENST00000468872 GPR42O15529 346 aa6.98□□□□□ -1.29
LSM5-209ENST00000468872 KATNA1O75449 491 aa6.98□□□□□ -1.29
LSM5-209ENST00000468872 PTPN1P18031 435 aaKnown RBP6.98□□□□□ -1.29
LSM5-209ENST00000468872 LSSP48449 732 aa6.98□□□□□ -1.29
LSM5-209ENST00000468872 EXOSC10Q01780 885 aaKnown RBP6.98□□□□□ -1.29
LSM5-209ENST00000468872 DBPQ10586 325 aaPredicted RBP6.98□□□□□ -1.29
LSM5-209ENST00000468872 ARHGAP44Q17R89 818 aa6.98□□□□□ -1.29
LSM5-209ENST00000468872 BTBD8Q5XKL5 378 aa6.98□□□□□ -1.29
LSM5-209ENST00000468872 NECAB2Q7Z6G3 386 aa6.98□□□□□ -1.29
LSM5-209ENST00000468872 NLGN4XQ8N0W4 816 aa6.98□□□□□ -1.29
LSM5-209ENST00000468872 SPTLC3Q9NUV7 552 aa6.98□□□□□ -1.29
LSM5-209ENST00000468872 OXSMQ9NWU1 459 aa6.98□□□□□ -1.29
LSM5-209ENST00000468872 SLC5A4Q9NY91 659 aa6.98□□□□□ -1.29
LSM5-209ENST00000468872 H2AFY2Q9P0M6 372 aaPredicted RBP6.98□□□□□ -1.29
LSM5-209ENST00000468872 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.97□□□□□ -1.29
LSM5-209ENST00000468872 SLC12A8A0AV02 714 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 FAM90A27PA6NNH2 459 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 KRT37O76014 449 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 S100BP04271 92 aaPredicted RBP6.97□□□□□ -1.29
LSM5-209ENST00000468872 ZBTB48P10074 688 aaPredicted RBP6.97□□□□□ -1.29
LSM5-209ENST00000468872 ICAM4Q14773 271 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 SLFN13Q68D06 897 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 RALYLQ86SE5 291 aaKnown RBP6.97□□□□□ -1.29
LSM5-209ENST00000468872 CIR1Q86X95 450 aaPredicted RBP6.97□□□□□ -1.29
LSM5-209ENST00000468872 NOSTRINQ8IVI9 506 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 COG1Q8WTW3 980 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 DVL3Q92997 716 aaPredicted RBP6.97□□□□□ -1.29
LSM5-209ENST00000468872 AJUBAQ96IF1 538 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 PTPN18Q99952 460 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 TACO1Q9BSH4 297 aaKnown RBP6.97□□□□□ -1.29
LSM5-209ENST00000468872 BOCQ9BWV1 1114 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 TRIM8Q9BZR9 551 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 SLC39A2Q9NP94 309 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 EMC7Q9NPA0 242 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 RIC8BQ9NVN3 520 aa6.97□□□□□ -1.29
LSM5-209ENST00000468872 C1QTNF3-AMACRE9PGA6 284 aa6.96□□□□□ -1.3
LSM5-209ENST00000468872 H0Y858 1186 aa6.96□□□□□ -1.3
LSM5-209ENST00000468872 DVL2O14641 736 aa6.96□□□□□ -1.3
LSM5-209ENST00000468872 CSF2RBP32927 897 aa6.96□□□□□ -1.3
LSM5-209ENST00000468872 KPNA1P52294 538 aaPredicted RBP6.96□□□□□ -1.3
LSM5-209ENST00000468872 MTMR1Q13613 665 aa6.96□□□□□ -1.3
LSM5-209ENST00000468872 ATP13A4Q4VNC1 1196 aa6.96□□□□□ -1.3
LSM5-209ENST00000468872 FIGNQ5HY92 759 aa6.96□□□□□ -1.3
LSM5-209ENST00000468872 ODR4Q5SWX8 454 aa6.96□□□□□ -1.3
LSM5-209ENST00000468872 CEP89Q96ST8 783 aa6.96□□□□□ -1.3
LSM5-209ENST00000468872 ASPSCR1Q9BZE9 553 aa6.96□□□□□ -1.3
LSM5-209ENST00000468872 MEGF9Q9H1U4 602 aa6.96□□□□□ -1.3
LSM5-209ENST00000468872 ATP23Q9Y6H3 246 aa6.96□□□□□ -1.3
LSM5-209ENST00000468872 TNFRSF1AP19438 455 aa6.95□□□□□ -1.3
LSM5-209ENST00000468872 IRF9Q00978 393 aa6.95□□□□□ -1.3
LSM5-209ENST00000468872 OCRLQ01968 901 aa6.95□□□□□ -1.3
LSM5-209ENST00000468872 GPR155Q7Z3F1 870 aa6.95□□□□□ -1.3
LSM5-209ENST00000468872 EFHBQ8N7U6 833 aa6.95□□□□□ -1.3
LSM5-209ENST00000468872 DNERQ8NFT8 737 aa6.95□□□□□ -1.3
LSM5-209ENST00000468872 KATNBL1Q9H079 304 aa6.95□□□□□ -1.3
LSM5-209ENST00000468872 CCDC8Q9H0W5 538 aaPredicted RBP6.95□□□□□ -1.3
LSM5-209ENST00000468872 CD248Q9HCU0 757 aa6.95□□□□□ -1.3
LSM5-209ENST00000468872 G3BP2Q9UN86 482 aaKnown RBP6.95□□□□□ -1.3
LSM5-209ENST00000468872 THRAP3Q9Y2W1 955 aaKnown RBP6.95□□□□□ -1.3
LSM5-209ENST00000468872 H7C1D1 291 aa6.94□□□□□ -1.3
LSM5-209ENST00000468872 TGM5O43548 720 aa6.94□□□□□ -1.3
LSM5-209ENST00000468872 PRKD3O94806 890 aa6.94□□□□□ -1.3
LSM5-209ENST00000468872 CNOT4O95628 575 aaKnown RBP6.94□□□□□ -1.3
LSM5-209ENST00000468872 GJA4P35212 333 aa6.94□□□□□ -1.3
LSM5-209ENST00000468872 REXO1L1PQ8IX06 675 aa6.94□□□□□ -1.3
LSM5-209ENST00000468872 CNTD1Q8N815 330 aa6.94□□□□□ -1.3
LSM5-209ENST00000468872 MTMR8Q96EF0 704 aa6.94□□□□□ -1.3
LSM5-209ENST00000468872 PUS7LQ9H0K6 701 aaKnown RBP6.94□□□□□ -1.3
LSM5-209ENST00000468872 SLC4A7Q9Y6M7 1214 aa6.94□□□□□ -1.3
LSM5-209ENST00000468872 PATE3B3GLJ2 98 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 SCDO00767 359 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 MATN3O15232 486 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 MARCH6O60337 910 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 ITKQ08881 620 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 SEC23AQ15436 765 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 EP400NLQ6ZTU2 488 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 C11orf74Q86VG3 221 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 KIAA1958Q8N8K9 716 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 JDP2Q8WYK2 163 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 DLG3Q92796 817 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 KLC2Q9H0B6 622 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 VTA1Q9NP79 307 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 ARHGAP28Q9P2N2 729 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 SPO11Q9Y5K1 396 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 B3GALT1Q9Y5Z6 326 aa6.93□□□□□ -1.3
LSM5-209ENST00000468872 CLASP2O75122 1294 aaKnown RBP6.92□□□□□ -1.3
LSM5-209ENST00000468872 PARNO95453 639 aaKnown RBP6.92□□□□□ -1.3
LSM5-209ENST00000468872 C4BPAP04003 597 aaKnown RBP6.92□□□□□ -1.3
LSM5-209ENST00000468872 SLC9A1P19634 815 aa6.92□□□□□ -1.3
LSM5-209ENST00000468872 POLD1P28340 1107 aa6.92□□□□□ -1.3
LSM5-209ENST00000468872 USP10Q14694 798 aaKnown RBP6.92□□□□□ -1.3
LSM5-209ENST00000468872 CDSNQ15517 529 aa6.92□□□□□ -1.3
LSM5-209ENST00000468872 IQSEC1Q6DN90 963 aa6.92□□□□□ -1.3
LSM5-209ENST00000468872 DPP8Q6V1X1 898 aaPredicted RBP6.92□□□□□ -1.3
LSM5-209ENST00000468872 HDGFL2Q7Z4V5 671 aaPredicted RBP6.92□□□□□ -1.3
LSM5-209ENST00000468872 RAVER1Q8IY67 606 aaKnown RBP6.92□□□□□ -1.3
LSM5-209ENST00000468872 IFNL2Q8IZJ0 200 aa6.92□□□□□ -1.3
LSM5-209ENST00000468872 CLRN3Q8NCR9 226 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms