RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 SERPING1P05155 500 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 TUBBP07437 444 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 RSPH10BP0C881 870 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 PLS3P13797 630 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 KCNA2P16389 499 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 PRLRP16471 622 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 EIF2AK2P19525 551 aaKnown RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 RFX1P22670 979 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 YWHABP31946 246 aaKnown RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 PRKCIP41743 596 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 IREB2P48200 963 aaKnown RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 KLK7P49862 253 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 VAV2P52735 878 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 UBXN2AP68543 259 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 GTF2BQ00403 316 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 SPA17Q15506 151 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 WHAMMP3Q1A5X7 153 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 GNPTABQ3T906 1256 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 SLC9C1Q4G0N8 1177 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 ODR4Q5SWX8 454 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 SMYD5Q6GMV2 418 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 CHADLQ6NUI6 762 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 OTUD6AQ7L8S5 288 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 RIOX2Q8IUF8 465 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 DAW1Q8N136 415 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 RNF10Q8N5U6 811 aaKnown RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 CEP112Q8N8E3 955 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 ACRBPQ8NEB7 543 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 SPIRE2Q8WWL2 714 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 DCPSQ96C86 337 aaKnown RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 EEF2KMTQ96G04 330 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 ZFP91Q96JP5 570 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 NAPGQ99747 312 aaPredicted RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 MOV10L1Q9BXT6 1211 aaKnown RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 GANQ9H2C0 597 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 ZHX3Q9H4I2 956 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 LUC7LQ9NQ29 371 aaKnown RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 ARHGAP20Q9P2F6 1191 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 SCAF8Q9UPN6 1271 aaKnown RBP8.36□□□□□ -1.07
COL6A3-208ENST00000468792 USP20Q9Y2K6 914 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 PPME1Q9Y570 386 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 RIPK3Q9Y572 518 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 A0A0G2JMZ2 1700 aa8.36□□□□□ -1.07
COL6A3-208ENST00000468792 ZMYM2Q9UBW7 1377 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 A0A0G2JLL6 359 aaPredicted RBP8.35□□□□□ -1.07
COL6A3-208ENST00000468792 LRRC53A6NM62 1247 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 BTNL10A8MVZ5 291 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 EPHB6O15197 1021 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 ATP9AO75110 1047 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 HIP1RO75146 1068 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 ATG7O95352 703 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 TGFB3P10600 412 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 EDNRBP24530 442 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 NCKAP1LP55160 1127 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 HERVK_113P62684 666 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 AMPD2Q01433 879 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 RAD51AP2Q09MP3 1159 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 KIF5AQ12840 1032 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 VGLL4Q14135 290 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 EXOC3L4Q17RC7 722 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 ZNF569Q5MCW4 686 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 KLHDC7AQ5VTJ3 777 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 SFMBT2Q5VUG0 894 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 PAPD7Q5XG87 772 aaKnown RBP8.35□□□□□ -1.07
COL6A3-208ENST00000468792 HGSNATQ68CP4 663 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 NSMFQ6X4W1 530 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 GBP6Q6ZN66 633 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 RSRC2Q7L4I2 434 aaKnown RBP8.35□□□□□ -1.07
COL6A3-208ENST00000468792 RRAGAQ7L523 313 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 CACNA2D4Q7Z3S7 1137 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 PRRT2Q7Z6L0 340 aaPredicted RBP8.35□□□□□ -1.07
COL6A3-208ENST00000468792 ERO1BQ86YB8 467 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 SULF1Q8IWU6 871 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 BANK1Q8NDB2 785 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 UBXN4Q92575 508 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 RABGGTAQ92696 567 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 KIFAP3Q92845 792 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 ATP6V0A1Q93050 837 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 SLC35C1Q96A29 364 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 WNK4Q96J92 1243 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 RPGRIP1Q96KN7 1286 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 ACCSQ96QU6 501 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 UIMC1Q96RL1 719 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 LZTFL1Q9NQ48 299 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 A1CFQ9NQ94 594 aaKnown RBP8.35□□□□□ -1.07
COL6A3-208ENST00000468792 AGPAT3Q9NRZ7 376 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 FAM207AQ9NSI2 230 aaPredicted RBP8.35□□□□□ -1.07
COL6A3-208ENST00000468792 KCNH4Q9UQ05 1017 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 CSADQ9Y600 493 aa8.35□□□□□ -1.07
COL6A3-208ENST00000468792 WDR90Q96KV7 1748 aa8.34□□□□□ -1.07
COL6A3-208ENST00000468792 COL11A1P12107 1806 aaPredicted RBP8.34□□□□□ -1.07
COL6A3-208ENST00000468792 SPDYE5A6NIY4 337 aa8.34□□□□□ -1.07
COL6A3-208ENST00000468792 H0YCG3 227 aa8.34□□□□□ -1.07
COL6A3-208ENST00000468792 ZBTB39O15060 712 aa8.34□□□□□ -1.07
COL6A3-208ENST00000468792 N4BP1O75113 896 aaKnown RBP8.34□□□□□ -1.07
COL6A3-208ENST00000468792 RGS20O76081 388 aa8.34□□□□□ -1.07
COL6A3-208ENST00000468792 STBD1O95210 358 aa8.34□□□□□ -1.07
COL6A3-208ENST00000468792 SLC25A27O95847 323 aa8.34□□□□□ -1.07
COL6A3-208ENST00000468792 CCNE2O96020 404 aa8.34□□□□□ -1.07
COL6A3-208ENST00000468792 PSAPP07602 524 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms