RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ZNF131P52739 623 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 PLS1Q14651 629 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 B3GNT9Q6UX72 402 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 MAEAQ7L5Y9 396 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 RTKN2Q8IZC4 609 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 MXRA8Q9BRK3 442 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 TEKT3Q9BXF9 490 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 WDR11Q9BZH6 1224 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 EHMT1Q9H9B1 1298 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 FEM1BQ9UK73 627 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 CCPG1Q9ULG6 757 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 TNS1Q9HBL0 1735 aaKnown RBP9.77□□□□□ -0.85
SYNE1-217ENST00000466159 UTRNP46939 3433 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 ZNF536O15090 1300 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 ZSCAN5CA6NGD5 496 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-217ENST00000466159 NFIBO00712 420 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 PLA2G6O60733 806 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 GFPT2O94808 682 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 GLI1P08151 1106 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 NOP2P46087 812 aaKnown RBP9.77□□□□□ -0.85
SYNE1-217ENST00000466159 DGKZQ13574 1117 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 NBPF9Q3BBW0 867 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 GRIPAP1Q4V328 841 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 IL31RAQ8NI17 732 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 INPP4AQ96PE3 977 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-217ENST00000466159 PSMD1Q99460 953 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 AGPAT3Q9NRZ7 376 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 RNF14Q9UBS8 474 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 FBXL5Q9UKA1 691 aa9.77□□□□□ -0.85
SYNE1-217ENST00000466159 GTPBP10A4D1E9 387 aaKnown RBP9.76□□□□□ -0.85
SYNE1-217ENST00000466159 BTNL10A8MVZ5 291 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 DDX3XO00571 662 aaKnown RBP eCLIP9.76□□□□□ -0.85
SYNE1-217ENST00000466159 HIP1RO75146 1068 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 TRIM49P0CI25 452 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 TRIM49CP0CI26 452 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 CAPN2P17655 700 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 RXRBP28702 533 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 PTGER2P43116 358 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 FMO5P49326 533 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 SETQ01105 290 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-217ENST00000466159 CBWD6Q4V339 395 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 CBWD3Q5JTY5 395 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 CBWD5Q5RIA9 395 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 C10orf76Q5T2E6 689 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 HS2ST1Q7LGA3 356 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 TEX2Q8IWB9 1127 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 DAW1Q8N136 415 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 RDH13Q8NBN7 331 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 ZNF341Q9BYN7 854 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 KCNH7Q9NS40 1196 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 STK32BQ9NY57 414 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 SEL1LQ9UBV2 794 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 PGAP2Q9UHJ9 254 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 ESYT3A0FGR9 886 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 FAM170AA1A519 330 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 ARHGEF35A5YM69 484 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 GOLGA6BA6NDN3 693 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 KCNK3O14649 394 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 PPP1R12BO60237 982 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-217ENST00000466159 EVI5O60447 810 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 FLOT1O75955 427 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 KCNA3P22001 575 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 MUTP22033 750 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 HSD17B4P51659 736 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 MAPK7Q13164 816 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 NFIL3Q16649 462 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 CPXCR1Q8N123 301 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 RUBCNQ92622 972 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 KRT12Q99456 494 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 DMAC2Q9NW81 257 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 CALCOCO1Q9P1Z2 691 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 ODF2LQ9ULJ1 636 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 NENFQ9UMX5 172 aa9.76□□□□□ -0.85
SYNE1-217ENST00000466159 WNT10BO00744 389 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 ICAM1P05362 532 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 ASNSP08243 561 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 DPEP1P16444 411 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 GUCY2CP25092 1073 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 CARSP49589 748 aaKnown RBP9.75□□□□□ -0.85
SYNE1-217ENST00000466159 RPS6KA1Q15418 735 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 ZSCAN26Q16670 478 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 FKBP1CQ5VVH2 108 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 PADI6Q6TGC4 694 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 MIER3Q7Z3K6 550 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 FAM83AQ86UY5 434 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 SYCP3Q8IZU3 236 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 LRRC57Q8N9N7 239 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 TSEN2Q8NCE0 465 aaKnown RBP9.75□□□□□ -0.85
SYNE1-217ENST00000466159 U2AF1L4Q8WU68 220 aaKnown RBP9.75□□□□□ -0.85
SYNE1-217ENST00000466159 CLEC4DQ8WXI8 215 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 HOOK2Q96ED9 719 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 CAMKK2Q96RR4 588 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 RIT2Q99578 217 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 SH2D3AQ9BRG2 576 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 MKNK1Q9BUB5 465 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 HOMER2Q9NSB8 354 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 KCND2Q9NZV8 630 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 DNAJC12Q9UKB3 198 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 FRMD4BQ9Y2L6 1034 aa9.75□□□□□ -0.85
SYNE1-217ENST00000466159 TISP43B9A030 160 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms