RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ZNF174Q15697 407 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 LEXMQ3ZCV2 418 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 POTEBQ6S5H4 581 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 SMAP1Q8IYB5 467 aaPredicted RBP19.91■□□□□ 0.78
COL7A1-205ENST00000465238 BANK1Q8NDB2 785 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 ZBTB10Q96DT7 871 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 FTHL17Q9BXU8 183 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 AGO3Q9H9G7 860 aaKnown RBP19.91■□□□□ 0.78
COL7A1-205ENST00000465238 RC3H2Q9HBD1 1191 aaKnown RBP19.91■□□□□ 0.78
COL7A1-205ENST00000465238 KCNMB3Q9NPA1 279 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 SAMM50Q9Y512 469 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 TRPV2Q9Y5S1 764 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 LOXHD1Q8IVV2 1947 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 ADGRA3Q8IWK6 1321 aa19.91■□□□□ 0.78
COL7A1-205ENST00000465238 MYO7AQ13402 2215 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 IGKV6D-21A0A0A0MT36 114 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 SMIM35A0A1B0GVV1 85 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 C5orf67F2Z3F1 127 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 BACH1O14867 736 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 PSMD10O75832 226 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 PSAPP07602 524 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 KCNA5P22460 613 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 CD52P31358 61 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 CTNNB1P35222 781 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 CALCRLQ16602 461 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 RILPL1Q5EBL4 403 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 FAM160B1Q5W0V3 765 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 ABHD15Q6UXT9 468 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 NME8Q8N427 588 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 TRAPPC12Q8WVT3 735 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 HAS1Q92839 578 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 PCDHA10Q9Y5I2 948 aa19.9■□□□□ 0.78
COL7A1-205ENST00000465238 MYH9P35579 1960 aaKnown RBP19.9■□□□□ 0.78
COL7A1-205ENST00000465238 WDR64B1ANS9 1081 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 WNT7AO00755 349 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 CHMP2AO43633 222 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 STX6O43752 255 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 HBP1O60381 514 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 PDIA4P13667 645 aaKnown RBP19.89■□□□□ 0.77
COL7A1-205ENST00000465238 SFNP31947 248 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 BMPR1AP36894 532 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 JAK3P52333 1124 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 MTHFD1LQ6UB35 978 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 FAM43BQ6ZT52 329 aaPredicted RBP19.89■□□□□ 0.77
COL7A1-205ENST00000465238 BRAPQ7Z569 592 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 CLP1Q92989 425 aaKnown RBP19.89■□□□□ 0.77
COL7A1-205ENST00000465238 ZNF689Q96CS4 500 aaPredicted RBP19.89■□□□□ 0.77
COL7A1-205ENST00000465238 C11orf84Q9BUA3 381 aaPredicted RBP19.89■□□□□ 0.77
COL7A1-205ENST00000465238 CELF4Q9BZC1 486 aaKnown RBP19.89■□□□□ 0.77
COL7A1-205ENST00000465238 UNC45AQ9H3U1 944 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 NSUN3Q9H649 340 aaKnown RBP19.89■□□□□ 0.77
COL7A1-205ENST00000465238 DISC1Q9NRI5 854 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 IGSF9BQ9UPX0 1349 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 KDM3AQ9Y4C1 1321 aa19.89■□□□□ 0.77
COL7A1-205ENST00000465238 DGKIO75912 1065 aa19.88■□□□□ 0.77
COL7A1-205ENST00000465238 LINC00271P0C7V0 271 aa19.88■□□□□ 0.77
COL7A1-205ENST00000465238 TOB1P50616 345 aaPredicted RBP19.88■□□□□ 0.77
COL7A1-205ENST00000465238 TMEM62Q0P6H9 643 aa19.88■□□□□ 0.77
COL7A1-205ENST00000465238 BTG3Q14201 252 aaPredicted RBP19.88■□□□□ 0.77
COL7A1-205ENST00000465238 SWSAP1Q6NVH7 229 aa19.88■□□□□ 0.77
COL7A1-205ENST00000465238 MIER3Q7Z3K6 550 aa19.88■□□□□ 0.77
COL7A1-205ENST00000465238 FERMT3Q86UX7 667 aa19.88■□□□□ 0.77
COL7A1-205ENST00000465238 ATP8B4Q8TF62 1192 aa19.88■□□□□ 0.77
COL7A1-205ENST00000465238 LMAN2LQ9H0V9 348 aa19.88■□□□□ 0.77
COL7A1-205ENST00000465238 ZNF302Q9NR11 478 aa19.88■□□□□ 0.77
COL7A1-205ENST00000465238 PADI3Q9ULW8 664 aa19.88■□□□□ 0.77
COL7A1-205ENST00000465238 COL1A2P08123 1366 aa19.87■□□□□ 0.77
COL7A1-205ENST00000465238 KLRC1P26715 233 aa19.87■□□□□ 0.77
COL7A1-205ENST00000465238 TXKP42681 527 aa19.87■□□□□ 0.77
COL7A1-205ENST00000465238 PAK2Q13177 524 aa19.87■□□□□ 0.77
COL7A1-205ENST00000465238 PUS10Q3MIT2 529 aaKnown RBP19.87■□□□□ 0.77
COL7A1-205ENST00000465238 TCEAL5Q5H9L2 206 aa19.87■□□□□ 0.77
COL7A1-205ENST00000465238 CCDC60Q8IWA6 550 aaPredicted RBP19.87■□□□□ 0.77
COL7A1-205ENST00000465238 RDM1Q8NG50 284 aa19.87■□□□□ 0.77
COL7A1-205ENST00000465238 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.87■□□□□ 0.77
COL7A1-205ENST00000465238 NEK9Q8TD19 979 aa19.87■□□□□ 0.77
COL7A1-205ENST00000465238 LINC01599Q8WXQ3 324 aa19.87■□□□□ 0.77
COL7A1-205ENST00000465238 PABPC5Q96DU9 382 aaKnown RBP19.87■□□□□ 0.77
COL7A1-205ENST00000465238 PCDHA12Q9UN75 941 aa19.87■□□□□ 0.77
COL7A1-205ENST00000465238 MTMR6Q9Y217 621 aa19.87■□□□□ 0.77
COL7A1-205ENST00000465238 WDR81Q562E7 1941 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 STAG3L1P0CL83 205 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 PPP2R5CQ13362 524 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 NBR1Q14596 966 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 COL19A1Q14993 1142 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 ZNF484Q5JVG2 852 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 PDXDC2PQ6P474 469 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 RTN4RL1Q86UN2 441 aaPredicted RBP19.86■□□□□ 0.77
COL7A1-205ENST00000465238 NPAS4Q8IUM7 802 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 CRIPAKQ8N1N5 446 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 MTMR9Q96QG7 549 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 PLVAPQ9BX97 442 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 TMEM60Q9H2L4 133 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 GABBR1Q9UBS5 961 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 PCDHB6Q9Y5E3 794 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 EVPLQ92817 2033 aa19.86■□□□□ 0.77
COL7A1-205ENST00000465238 NCK2O43639 380 aa19.85■□□□□ 0.77
COL7A1-205ENST00000465238 OR52Z1P0C646 297 aa19.85■□□□□ 0.77
COL7A1-205ENST00000465238 PTCRAQ6ISU1 281 aaPredicted RBP19.85■□□□□ 0.77
COL7A1-205ENST00000465238 B3GNT9Q6UX72 402 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms