RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 PPTC7Q8NI37 304 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 ENOX1Q8TC92 643 aaKnown RBP13.14□□□□□ -0.31
USP54-209ENST00000464635 POLR3CQ9BUI4 534 aaPredicted RBP13.14□□□□□ -0.31
USP54-209ENST00000464635 MTIF3Q9H2K0 278 aaKnown RBP13.14□□□□□ -0.31
USP54-209ENST00000464635 PRDM12Q9H4Q4 367 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 HDAC6Q9UBN7 1215 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 NOD1Q9Y239 953 aa13.14□□□□□ -0.31
USP54-209ENST00000464635 COL4A4P53420 1690 aaPredicted RBP13.14□□□□□ -0.31
USP54-209ENST00000464635 FAM86B1E9PN63 330 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 HAS3O00219 553 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 PITPNM1O00562 1244 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 FAM86B2P0C5J1 330 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 RPA1P27694 616 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 ZNF76P36508 570 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 ZNF200P98182 395 aaPredicted RBP13.13□□□□□ -0.31
USP54-209ENST00000464635 SPIRE1Q08AE8 756 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 PPP2R5CQ13362 524 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 HIC1Q14526 733 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 RNF214Q8ND24 703 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 NEK9Q8TD19 979 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 SLC5A5Q92911 643 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 WNT8BQ93098 351 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 CCDC47Q96A33 483 aaKnown RBP13.13□□□□□ -0.31
USP54-209ENST00000464635 SPATA33Q96N06 139 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 MXRA8Q9BRK3 442 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 GTF2IRD1Q9UHL9 959 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 MAN1B1Q9UKM7 699 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 TELO2Q9Y4R8 837 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 SLC4A7Q9Y6M7 1214 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 SIP14410 1827 aa13.13□□□□□ -0.31
USP54-209ENST00000464635 MICAL3Q7RTP6 2002 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 MSH4O15457 936 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 PSMD10O75832 226 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 RHOBTB3O94955 611 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 PFKMP08237 780 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 PSMD2Q13200 908 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 GRB10Q13322 594 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 BFSP2Q13515 415 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 DHX8Q14562 1220 aaKnown RBP13.12□□□□□ -0.31
USP54-209ENST00000464635 GPNMBQ14956 572 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 KARSQ15046 597 aaKnown RBP13.12□□□□□ -0.31
USP54-209ENST00000464635 RAB30Q15771 203 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 KIAA0753Q2KHM9 967 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 PRR16Q569H4 304 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 ZNF658Q5TYW1 1059 aaPredicted RBP13.12□□□□□ -0.31
USP54-209ENST00000464635 B3GNT9Q6UX72 402 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 SV2BQ7L1I2 683 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 DHX40Q8IX18 779 aaKnown RBP13.12□□□□□ -0.31
USP54-209ENST00000464635 RETREG2Q8NC44 543 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 INPP4AQ96PE3 977 aaPredicted RBP13.12□□□□□ -0.31
USP54-209ENST00000464635 MTRQ99707 1265 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 PANK2Q9BZ23 570 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 TUFT1Q9NNX1 390 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 MSRAQ9UJ68 235 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 UBIAD1Q9Y5Z9 338 aa13.12□□□□□ -0.31
USP54-209ENST00000464635 LOXHD1Q8IVV2 1947 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 CUL9Q8IWT3 2517 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 TPM3P06753 285 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 ATP2A2P16615 1042 aaKnown RBP13.11□□□□□ -0.31
USP54-209ENST00000464635 PLCG1P19174 1290 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 CDC25BP30305 580 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 RFC2P35250 354 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 MYL5Q02045 173 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 ADGRE1Q14246 886 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 TCTN1Q2MV58 587 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 DPCR1Q3MIW9 517 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 KCNV1Q6PIU1 500 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 C11orf57Q6ZUT1 292 aaPredicted RBP13.11□□□□□ -0.31
USP54-209ENST00000464635 PLA2G4DQ86XP0 818 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 C7orf31Q8N865 590 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 LARP4BQ92615 738 aaKnown RBP13.11□□□□□ -0.31
USP54-209ENST00000464635 CDK5RAP3Q96JB5 506 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 CDHR1Q96JP9 859 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 C16orf70Q9BSU1 422 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 TRIM9Q9C026 710 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 JADE2Q9NQC1 790 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 TBC1D22BQ9NU19 505 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 REV3LO60673 3130 aa13.11□□□□□ -0.31
USP54-209ENST00000464635 KAT6AQ92794 2004 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 SPATA31C2B4DYI2 1134 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 ARHGEF15O94989 841 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 RPN1P04843 607 aaKnown RBP13.1□□□□□ -0.31
USP54-209ENST00000464635 LGALS2P05162 132 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 CKBP12277 381 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 BMP6P22004 513 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 RBL2Q08999 1139 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 NCAPHQ15003 741 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 TRIM71Q2Q1W2 868 aaKnown RBP13.1□□□□□ -0.31
USP54-209ENST00000464635 TRAF7Q6Q0C0 670 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 LRRC8DQ7L1W4 858 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 LUZP1Q86V48 1076 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 TRIM50Q86XT4 487 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 CCDC155Q8N6L0 562 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 RDM1Q8NG50 284 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 RASSF8Q8NHQ8 419 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 CAGE1Q8TC20 777 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 AFAP1L1Q8TED9 768 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 SNX29Q8TEQ0 813 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 RAD54LQ92698 747 aa13.1□□□□□ -0.31
USP54-209ENST00000464635 GPRASP2Q96D09 838 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms