RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 FBXL18Q96ME1 805 aa25.66■■□□□ 1.7
USP4-208ENST00000464168 CCDC196A0A1B0GTZ2 297 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 PER2O15055 1255 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 FGF18O76093 207 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 FGFR1P11362 822 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 CPA1P15085 419 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 ERVFC1P60507 584 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 APOBRQ0VD83 1088 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 DSC3Q14574 896 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 PKN1Q16512 942 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 MCTP2Q6DN12 878 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 METTL13Q8N6R0 699 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 COLGALT1Q8NBJ5 622 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 EDAQ92838 391 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 KCNH6Q9H252 994 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 C6orf50Q9HD87 102 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 TLR9Q9NR96 1032 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 TMEM161AQ9NX61 479 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 USP15Q9Y4E8 981 aaPredicted RBP25.65■■□□□ 1.7
USP4-208ENST00000464168 PCDHA10Q9Y5I2 948 aa25.65■■□□□ 1.7
USP4-208ENST00000464168 EVPLQ92817 2033 aa25.64■■□□□ 1.7
USP4-208ENST00000464168 LOC730098B7Z3J9 87 aa25.64■■□□□ 1.7
USP4-208ENST00000464168 RBM10P98175 930 aaKnown RBP25.64■■□□□ 1.7
USP4-208ENST00000464168 SETQ01105 290 aaPredicted RBP25.64■■□□□ 1.7
USP4-208ENST00000464168 PRR16Q569H4 304 aa25.64■■□□□ 1.7
USP4-208ENST00000464168 SMAP1Q8IYB5 467 aaPredicted RBP25.64■■□□□ 1.7
USP4-208ENST00000464168 REXO1Q8N1G1 1221 aaKnown RBP25.64■■□□□ 1.7
USP4-208ENST00000464168 VN1R2Q8NFZ6 395 aa25.64■■□□□ 1.7
USP4-208ENST00000464168 CWH43Q9H720 699 aa25.64■■□□□ 1.7
USP4-208ENST00000464168 ELAC1Q9H777 363 aaKnown RBP25.64■■□□□ 1.7
USP4-208ENST00000464168 ATP6V0A4Q9HBG4 840 aa25.64■■□□□ 1.7
USP4-208ENST00000464168 PSAPP07602 524 aa25.63■■□□□ 1.69
USP4-208ENST00000464168 CIITAP33076 1130 aa25.63■■□□□ 1.69
USP4-208ENST00000464168 FGD1P98174 961 aa25.63■■□□□ 1.69
USP4-208ENST00000464168 THNSL1Q8IYQ7 743 aa25.63■■□□□ 1.69
USP4-208ENST00000464168 MFSD14AQ96MC6 490 aa25.63■■□□□ 1.69
USP4-208ENST00000464168 GABBR1Q9UBS5 961 aa25.63■■□□□ 1.69
USP4-208ENST00000464168 PLXNA4Q9HCM2 1894 aa25.63■■□□□ 1.69
USP4-208ENST00000464168 FNDC1Q4ZHG4 1894 aaPredicted RBP25.62■■□□□ 1.69
USP4-208ENST00000464168 FSCN2O14926 492 aa25.62■■□□□ 1.69
USP4-208ENST00000464168 PRPF3O43395 683 aaKnown RBP25.62■■□□□ 1.69
USP4-208ENST00000464168 CLCN3P51790 818 aa25.62■■□□□ 1.69
USP4-208ENST00000464168 NHLH1Q02575 133 aa25.62■■□□□ 1.69
USP4-208ENST00000464168 CBX2Q14781 532 aaPredicted RBP25.62■■□□□ 1.69
USP4-208ENST00000464168 DUSP6Q16828 381 aa25.62■■□□□ 1.69
USP4-208ENST00000464168 Q6ZUG5 572 aa25.62■■□□□ 1.69
USP4-208ENST00000464168 CCDC12Q8WUD4 166 aaPredicted RBP25.62■■□□□ 1.69
USP4-208ENST00000464168 KCNB2Q92953 911 aa25.62■■□□□ 1.69
USP4-208ENST00000464168 LENG9Q96B70 501 aa25.62■■□□□ 1.69
USP4-208ENST00000464168 MAGEB2O15479 319 aa25.61■■□□□ 1.69
USP4-208ENST00000464168 CDC45O75419 566 aa25.61■■□□□ 1.69
USP4-208ENST00000464168 NLRP11P59045 1033 aaKnown RBP25.61■■□□□ 1.69
USP4-208ENST00000464168 PDE12Q6L8Q7 609 aaKnown RBP25.61■■□□□ 1.69
USP4-208ENST00000464168 LINC01465Q8N7H1 131 aa25.61■■□□□ 1.69
USP4-208ENST00000464168 RASGRP4Q8TDF6 673 aa25.61■■□□□ 1.69
USP4-208ENST00000464168 BRF1Q92994 677 aa25.61■■□□□ 1.69
USP4-208ENST00000464168 CDCA3Q99618 268 aaPredicted RBP25.61■■□□□ 1.69
USP4-208ENST00000464168 ADAMTS10Q9H324 1103 aa25.61■■□□□ 1.69
USP4-208ENST00000464168 RNF19AQ9NV58 838 aa25.61■■□□□ 1.69
USP4-208ENST00000464168 CEP131Q9UPN4 1083 aa25.61■■□□□ 1.69
USP4-208ENST00000464168 EDIL3O43854 480 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 LAG3P18627 525 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 GNA11P29992 359 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 EFCAB12Q6NXP0 572 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 LRRC55Q6ZSA7 311 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 SUSD6Q92537 303 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 PHKBQ93100 1093 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 FAM167AQ96KS9 214 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 CASD1Q96PB1 797 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 PHF7Q9BWX1 381 aaPredicted RBP25.6■■□□□ 1.69
USP4-208ENST00000464168 TMEM117Q9H0C3 514 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 TCEAL9Q9UHQ7 104 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 LZTS1Q9Y250 596 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 SAMM50Q9Y512 469 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 ZDBF2Q9HCK1 2354 aa25.6■■□□□ 1.69
USP4-208ENST00000464168 NID2Q14112 1375 aa25.59■■□□□ 1.69
USP4-208ENST00000464168 ZNF862O60290 1169 aa25.59■■□□□ 1.69
USP4-208ENST00000464168 KCNC3Q14003 757 aa25.59■■□□□ 1.69
USP4-208ENST00000464168 TRIM67Q6ZTA4 783 aa25.59■■□□□ 1.69
USP4-208ENST00000464168 CENPQQ7L2Z9 268 aaPredicted RBP25.59■■□□□ 1.69
USP4-208ENST00000464168 BMP8AQ7Z5Y6 402 aa25.59■■□□□ 1.69
USP4-208ENST00000464168 LRRC71Q8N4P6 559 aa25.59■■□□□ 1.69
USP4-208ENST00000464168 JAKMIP1Q96N16 626 aaKnown RBP25.59■■□□□ 1.69
USP4-208ENST00000464168 AKT3Q9Y243 479 aa25.59■■□□□ 1.69
USP4-208ENST00000464168 FSD2A1L4K1 749 aa25.58■■□□□ 1.69
USP4-208ENST00000464168 WDR64B1ANS9 1081 aa25.58■■□□□ 1.69
USP4-208ENST00000464168 EIF4BP23588 611 aaKnown RBP25.58■■□□□ 1.69
USP4-208ENST00000464168 MRE11P49959 708 aa25.58■■□□□ 1.69
USP4-208ENST00000464168 PLCB3Q01970 1234 aa25.58■■□□□ 1.69
USP4-208ENST00000464168 NTRK3Q16288 839 aa25.58■■□□□ 1.69
USP4-208ENST00000464168 TMEM184AQ6ZMB5 413 aa25.58■■□□□ 1.69
USP4-208ENST00000464168 MRPS27Q92552 414 aaKnown RBP25.58■■□□□ 1.69
USP4-208ENST00000464168 MAP7D2Q96T17 732 aa25.58■■□□□ 1.69
USP4-208ENST00000464168 DISC1Q9NRI5 854 aa25.58■■□□□ 1.69
USP4-208ENST00000464168 SNX14Q9Y5W7 946 aa25.58■■□□□ 1.69
USP4-208ENST00000464168 MYH9P35579 1960 aaKnown RBP25.57■■□□□ 1.68
USP4-208ENST00000464168 TMEM221A6NGB7 291 aa25.57■■□□□ 1.68
USP4-208ENST00000464168 M0R296 226 aa25.57■■□□□ 1.68
USP4-208ENST00000464168 MSH4O15457 936 aa25.57■■□□□ 1.68
USP4-208ENST00000464168 ATF7P17544 494 aaPredicted RBP25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms