RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 H2AFVQ71UI9 128 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 GLYCTKQ8IVS8 523 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 ZNF34Q8IZ26 560 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.69□□□□□ -0.38
CPSF3-202ENST00000460593 SYN2Q92777 582 aaPredicted RBP12.69□□□□□ -0.38
CPSF3-202ENST00000460593 POP1Q99575 1024 aaKnown RBP12.69□□□□□ -0.38
CPSF3-202ENST00000460593 CRNKL1Q9BZJ0 848 aaKnown RBP12.69□□□□□ -0.38
CPSF3-202ENST00000460593 SLITRK6Q9H5Y7 841 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 KCNK9Q9NPC2 374 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 HDAC9Q9UKV0 1011 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 TNS2Q63HR2 1409 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 FRMPD2Q68DX3 1309 aaPredicted RBP12.69□□□□□ -0.38
CPSF3-202ENST00000460593 IRF6O14896 467 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 TNNI2P48788 182 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 RIPK1Q13546 671 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 UBE2SQ16763 222 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 BARGINQ6ZT62 677 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 JAMLQ86YT9 394 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 CCDC24Q8N4L8 307 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 SCFD1Q8WVM8 642 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 ALG3Q92685 438 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 FAM84BQ96KN1 310 aaPredicted RBP12.69□□□□□ -0.38
CPSF3-202ENST00000460593 TMEM237Q96Q45 408 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 ERP44Q9BS26 406 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 PLCH1Q4KWH8 1693 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 DPPA5A6NC42 116 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 ACSL3O95573 720 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 NR2F2P24468 414 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 RPL21P46778 160 aaKnown RBP12.69□□□□□ -0.38
CPSF3-202ENST00000460593 COPS2P61201 443 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 DUPD1Q68J44 220 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 KRT25Q7Z3Z0 450 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 CPNE8Q86YQ8 564 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 CENPTQ96BT3 561 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 ARHGEF26Q96DR7 871 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 NUCKS1Q9H1E3 243 aaKnown RBP12.69□□□□□ -0.38
CPSF3-202ENST00000460593 BATF3Q9NR55 127 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 TAS2R14Q9NYV8 317 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 USP15Q9Y4E8 981 aaPredicted RBP12.69□□□□□ -0.38
CPSF3-202ENST00000460593 CFAP73A6NFT4 308 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 KIF3CO14782 793 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 ATP2A2P16615 1042 aaKnown RBP12.68□□□□□ -0.38
CPSF3-202ENST00000460593 KCNJ1P48048 391 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 CTCFP49711 727 aaPredicted RBP12.68□□□□□ -0.38
CPSF3-202ENST00000460593 CCDC152Q4G0S7 254 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 COBLL1Q53SF7 1204 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 KRT79Q5XKE5 535 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 FAM47EQ6ZV65 393 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 EXOC3L1Q86VI1 746 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 PALB2Q86YC2 1186 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 RASGEF1CQ8N431 466 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 DAGLBQ8NCG7 672 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 SLC35G2Q8TBE7 412 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 AMFRQ9UKV5 643 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 MYH3P11055 1940 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 ADAMTS2O95450 1211 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 PON1P27169 355 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 CASP4P49662 377 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 MGAT5Q09328 741 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 AUHQ13825 339 aaKnown RBP12.68□□□□□ -0.38
CPSF3-202ENST00000460593 SMIM5Q71RC9 77 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 REXO1Q8N1G1 1221 aaKnown RBP12.68□□□□□ -0.38
CPSF3-202ENST00000460593 EIF1ADQ8N9N8 165 aaKnown RBP12.68□□□□□ -0.38
CPSF3-202ENST00000460593 LNX1Q8TBB1 728 aaPredicted RBP12.68□□□□□ -0.38
CPSF3-202ENST00000460593 SPIRE2Q8WWL2 714 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 MTMR9Q96QG7 549 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 RIC8AQ9NPQ8 531 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 NIP7Q9Y221 180 aaKnown RBP eCLIP12.68□□□□□ -0.38
CPSF3-202ENST00000460593 UBR2Q8IWV8 1755 aa12.68□□□□□ -0.38
CPSF3-202ENST00000460593 ABCB11O95342 1321 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 TCRBV7S2A1N4TA0A589 114 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 CCDC169A6NNP5 214 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 KIAA0391O15091 583 aaKnown RBP12.67□□□□□ -0.38
CPSF3-202ENST00000460593 CLIC2O15247 247 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 MARCH6O60337 910 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 ALADP13716 330 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 CCND1P24385 295 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 EIF3BP55884 814 aaKnown RBP12.67□□□□□ -0.38
CPSF3-202ENST00000460593 BLMHQ13867 455 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 MPP2Q14168 576 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 NKX1-1Q15270 411 aaPredicted RBP12.67□□□□□ -0.38
CPSF3-202ENST00000460593 KIAA1755Q5JYT7 1200 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 ZDHHC14Q8IZN3 488 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 ANKLE1Q8NAG6 615 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 SEC14L1Q92503 715 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 UTP4Q969X6 686 aaKnown RBP12.67□□□□□ -0.38
CPSF3-202ENST00000460593 HES6Q96HZ4 224 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 C6orf50Q9HD87 102 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 TBK1Q9UHD2 729 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 KIAA1024Q9UPX6 916 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 COL18A1P39060 1754 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 POTEB3A0JP26 581 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 TMEM120BA0PK00 339 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 POTECB2RU33 542 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 RASGRF2O14827 1237 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 DDX3YO15523 660 aaKnown RBP12.67□□□□□ -0.38
CPSF3-202ENST00000460593 ATP4AP20648 1035 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 DPY19L2P1Q6NXN4 242 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 TTC27Q6P3X3 843 aa12.67□□□□□ -0.38
CPSF3-202ENST00000460593 POTEBQ6S5H4 581 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms