RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 SEPT9Q9UHD8 586 aaPredicted RBP22.34■■□□□ 1.17
COL9A3-202ENST00000452372 PRPHP41219 470 aa22.33■■□□□ 1.17
COL9A3-202ENST00000452372 WDR5P61964 334 aaKnown RBP22.33■■□□□ 1.17
COL9A3-202ENST00000452372 TAP1Q03518 808 aa22.33■■□□□ 1.17
COL9A3-202ENST00000452372 MGAT3Q09327 533 aa22.33■■□□□ 1.17
COL9A3-202ENST00000452372 CTTNQ14247 550 aaKnown RBP22.33■■□□□ 1.17
COL9A3-202ENST00000452372 PDIA5Q14554 519 aa22.33■■□□□ 1.17
COL9A3-202ENST00000452372 TMEM266Q2M3C6 531 aa22.33■■□□□ 1.17
COL9A3-202ENST00000452372 IER5Q5VY09 327 aa22.33■■□□□ 1.17
COL9A3-202ENST00000452372 SPRED2Q7Z698 418 aa22.33■■□□□ 1.17
COL9A3-202ENST00000452372 TMCO2Q7Z6W1 182 aaPredicted RBP22.33■■□□□ 1.17
COL9A3-202ENST00000452372 TPH2Q8IWU9 490 aa22.33■■□□□ 1.17
COL9A3-202ENST00000452372 KIAA0319LQ8IZA0 1049 aa22.33■■□□□ 1.17
COL9A3-202ENST00000452372 CEP89Q96ST8 783 aa22.33■■□□□ 1.17
COL9A3-202ENST00000452372 CERS4Q9HA82 394 aa22.33■■□□□ 1.17
COL9A3-202ENST00000452372 TMEM150BA6NC51 233 aa22.32■■□□□ 1.16
COL9A3-202ENST00000452372 LYPLA2O95372 231 aa22.32■■□□□ 1.16
COL9A3-202ENST00000452372 PDIA4P13667 645 aaKnown RBP22.32■■□□□ 1.16
COL9A3-202ENST00000452372 POU3F3P20264 500 aaPredicted RBP22.32■■□□□ 1.16
COL9A3-202ENST00000452372 MRPS6P82932 125 aaKnown RBP22.32■■□□□ 1.16
COL9A3-202ENST00000452372 ATP2C1P98194 919 aaPredicted RBP22.32■■□□□ 1.16
COL9A3-202ENST00000452372 RESTQ13127 1097 aa22.32■■□□□ 1.16
COL9A3-202ENST00000452372 MTERF2Q49AM1 385 aa22.32■■□□□ 1.16
COL9A3-202ENST00000452372 CNKSR3Q6P9H4 555 aa22.32■■□□□ 1.16
COL9A3-202ENST00000452372 METTL13Q8N6R0 699 aa22.32■■□□□ 1.16
COL9A3-202ENST00000452372 LINC01465Q8N7H1 131 aa22.32■■□□□ 1.16
COL9A3-202ENST00000452372 YWHABP31946 246 aaKnown RBP22.31■■□□□ 1.16
COL9A3-202ENST00000452372 DEFB103AP81534 67 aa22.31■■□□□ 1.16
COL9A3-202ENST00000452372 TBC1D8BQ0IIM8 1120 aa22.31■■□□□ 1.16
COL9A3-202ENST00000452372 TJAP1Q5JTD0 557 aa22.31■■□□□ 1.16
COL9A3-202ENST00000452372 EFCAB12Q6NXP0 572 aa22.31■■□□□ 1.16
COL9A3-202ENST00000452372 DTHD1Q6ZMT9 781 aa22.31■■□□□ 1.16
COL9A3-202ENST00000452372 OTUD6AQ7L8S5 288 aa22.31■■□□□ 1.16
COL9A3-202ENST00000452372 IGSF22Q8N9C0 903 aa22.31■■□□□ 1.16
COL9A3-202ENST00000452372 POLR3CQ9BUI4 534 aaPredicted RBP22.31■■□□□ 1.16
COL9A3-202ENST00000452372 CYP26B1Q9NR63 512 aa22.31■■□□□ 1.16
COL9A3-202ENST00000452372 CDY2AQ9Y6F7 541 aa22.31■■□□□ 1.16
COL9A3-202ENST00000452372 XIRP2A4UGR9 3374 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 SPATA31C1P0DKV0 1188 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 TMOD1P28289 359 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 TMEM62Q0P6H9 643 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 MKRN4PQ13434 485 aaPredicted RBP22.3■■□□□ 1.16
COL9A3-202ENST00000452372 PLEKHG4Q58EX7 1191 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 CATSPER3Q86XQ3 398 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 ERMNQ8TAM6 284 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 SH2D3AQ9BRG2 576 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 OSBPL7Q9BZF2 842 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 RAB34Q9BZG1 259 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 ZSCAN16Q9H4T2 348 aaPredicted RBP22.3■■□□□ 1.16
COL9A3-202ENST00000452372 TUFT1Q9NNX1 390 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 LRWD1Q9UFC0 647 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 PPME1Q9Y570 386 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 MTCH2Q9Y6C9 303 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 KDM3AQ9Y4C1 1321 aa22.3■■□□□ 1.16
COL9A3-202ENST00000452372 BDP1A6H8Y1 2624 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 IGKV6-21A0A0C4DH24 114 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 ABHD14A-ACY1A0A1B0GW23 586 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 LCHNA4D1U4 455 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 M0QZ92 97 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 ZBTB39O15060 712 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 MAFO75444 373 aaPredicted RBP22.29■■□□□ 1.16
COL9A3-202ENST00000452372 XRCC6P12956 609 aaKnown RBP eCLIP22.29■■□□□ 1.16
COL9A3-202ENST00000452372 NPEPPSP55786 919 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 IL17AQ16552 155 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 ARL6IP4Q66PJ3 421 aaKnown RBP22.29■■□□□ 1.16
COL9A3-202ENST00000452372 PLA2G4FQ68DD2 849 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 LRRC71Q8N4P6 559 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 SPRYD3Q8NCJ5 442 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 DBF4BQ8NFT6 615 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 ATXN2LQ8WWM7 1075 aaKnown RBP22.29■■□□□ 1.16
COL9A3-202ENST00000452372 SYMPKQ92797 1274 aaKnown RBP22.29■■□□□ 1.16
COL9A3-202ENST00000452372 CEP170P1Q96L14 293 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 CELF4Q9BZC1 486 aaKnown RBP22.29■■□□□ 1.16
COL9A3-202ENST00000452372 SUGCTQ9HAC7 445 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 TRPV2Q9Y5S1 764 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 SQORQ9Y6N5 450 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 SIP14410 1827 aa22.29■■□□□ 1.16
COL9A3-202ENST00000452372 LOXHD1Q8IVV2 1947 aa22.28■■□□□ 1.16
COL9A3-202ENST00000452372 MED24O75448 989 aa22.28■■□□□ 1.16
COL9A3-202ENST00000452372 BMP15O95972 392 aa22.28■■□□□ 1.16
COL9A3-202ENST00000452372 RPA1P27694 616 aa22.28■■□□□ 1.16
COL9A3-202ENST00000452372 CLCN3P51790 818 aa22.28■■□□□ 1.16
COL9A3-202ENST00000452372 FBXO47Q5MNV8 452 aa22.28■■□□□ 1.16
COL9A3-202ENST00000452372 EXOC8Q8IYI6 725 aa22.28■■□□□ 1.16
COL9A3-202ENST00000452372 ZNF710Q8N1W2 664 aa22.28■■□□□ 1.16
COL9A3-202ENST00000452372 ZNF579Q8NAF0 562 aaKnown RBP22.28■■□□□ 1.16
COL9A3-202ENST00000452372 ASB2Q96Q27 587 aa22.28■■□□□ 1.16
COL9A3-202ENST00000452372 JPH2Q9BR39 696 aaPredicted RBP22.28■■□□□ 1.16
COL9A3-202ENST00000452372 ANKEF1Q9NU02 776 aa22.28■■□□□ 1.16
COL9A3-202ENST00000452372 STK24Q9Y6E0 443 aa22.28■■□□□ 1.16
COL9A3-202ENST00000452372 TLL1O43897 1013 aa22.27■■□□□ 1.16
COL9A3-202ENST00000452372 LPXNO60711 386 aa22.27■■□□□ 1.16
COL9A3-202ENST00000452372 KCNJ6P48051 423 aa22.27■■□□□ 1.16
COL9A3-202ENST00000452372 IKBKEQ14164 716 aa22.27■■□□□ 1.16
COL9A3-202ENST00000452372 LPIN1Q14693 890 aa22.27■■□□□ 1.16
COL9A3-202ENST00000452372 SF3A1Q15459 793 aaKnown RBP22.27■■□□□ 1.16
COL9A3-202ENST00000452372 XKR9Q5GH70 373 aa22.27■■□□□ 1.16
COL9A3-202ENST00000452372 HAUS3Q68CZ6 603 aa22.27■■□□□ 1.16
COL9A3-202ENST00000452372 SEPT8Q92599 483 aa22.27■■□□□ 1.16
COL9A3-202ENST00000452372 MAP7D2Q96T17 732 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms