RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 GAS2O43903 313 aaKnown RBP18.3■□□□□ 0.52
SF3A1-204ENST00000447376 RPS6KA5O75582 802 aa18.3■□□□□ 0.52
SF3A1-204ENST00000447376 VTNP04004 478 aa18.3■□□□□ 0.52
SF3A1-204ENST00000447376 CD52P31358 61 aa18.3■□□□□ 0.52
SF3A1-204ENST00000447376 RABGGTBP53611 331 aa18.3■□□□□ 0.52
SF3A1-204ENST00000447376 CRYBB1P53674 252 aaPredicted RBP18.3■□□□□ 0.52
SF3A1-204ENST00000447376 KIZQ2M2Z5 673 aa18.3■□□□□ 0.52
SF3A1-204ENST00000447376 XKR9Q5GH70 373 aa18.3■□□□□ 0.52
SF3A1-204ENST00000447376 ANO5Q75V66 913 aa18.3■□□□□ 0.52
SF3A1-204ENST00000447376 NLRP7Q8WX94 980 aa18.3■□□□□ 0.52
SF3A1-204ENST00000447376 NKX2-4Q9H2Z4 354 aa18.3■□□□□ 0.52
SF3A1-204ENST00000447376 SEMA6BQ9H3T3 888 aa18.3■□□□□ 0.52
SF3A1-204ENST00000447376 ZNF576Q9H609 170 aa18.3■□□□□ 0.52
SF3A1-204ENST00000447376 TET1Q8NFU7 2136 aa18.29■□□□□ 0.52
SF3A1-204ENST00000447376 MAFO75444 373 aaPredicted RBP18.29■□□□□ 0.52
SF3A1-204ENST00000447376 PBX2P40425 430 aa18.29■□□□□ 0.52
SF3A1-204ENST00000447376 NLRP11P59045 1033 aaKnown RBP18.29■□□□□ 0.52
SF3A1-204ENST00000447376 DEFB103AP81534 67 aa18.29■□□□□ 0.52
SF3A1-204ENST00000447376 NFX1Q12986 1120 aaKnown RBP18.29■□□□□ 0.52
SF3A1-204ENST00000447376 PTGDRQ13258 359 aa18.29■□□□□ 0.52
SF3A1-204ENST00000447376 TARBP2Q15633 366 aaKnown RBP18.29■□□□□ 0.52
SF3A1-204ENST00000447376 PLA2G4FQ68DD2 849 aa18.29■□□□□ 0.52
SF3A1-204ENST00000447376 SPRYD3Q8NCJ5 442 aa18.29■□□□□ 0.52
SF3A1-204ENST00000447376 PPP1R16BQ96T49 567 aa18.29■□□□□ 0.52
SF3A1-204ENST00000447376 RAD9AQ99638 391 aa18.29■□□□□ 0.52
SF3A1-204ENST00000447376 OSMRQ99650 979 aa18.29■□□□□ 0.52
SF3A1-204ENST00000447376 TUFT1Q9NNX1 390 aa18.29■□□□□ 0.52
SF3A1-204ENST00000447376 LRWD1Q9UFC0 647 aa18.29■□□□□ 0.52
SF3A1-204ENST00000447376 PCDHB6Q9Y5E3 794 aa18.29■□□□□ 0.52
SF3A1-204ENST00000447376 SLITRK3O94933 977 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 LYPLA2O95372 231 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 GJB5O95377 273 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 FXR2P51116 673 aaKnown RBP eCLIP18.28■□□□□ 0.523e-6■■□□□ 11.6
SF3A1-204ENST00000447376 NBR1Q14596 966 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 FAM117BQ6P1L5 589 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 DTHD1Q6ZMT9 781 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 TCP11Q8WWU5 503 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 HSD17B14Q9BPX1 270 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 SH2D3AQ9BRG2 576 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 INO80BQ9C086 356 aaPredicted RBP18.28■□□□□ 0.52
SF3A1-204ENST00000447376 ZSCAN16Q9H4T2 348 aaPredicted RBP18.28■□□□□ 0.52
SF3A1-204ENST00000447376 ANKEF1Q9NU02 776 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 MTMR10Q9NXD2 777 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 SUCLA2Q9P2R7 463 aaPredicted RBP18.28■□□□□ 0.52
SF3A1-204ENST00000447376 PADI3Q9ULW8 664 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 INSL6Q9Y581 213 aa18.28■□□□□ 0.52
SF3A1-204ENST00000447376 DENND3A2RUS2 1198 aa18.27■□□□□ 0.52
SF3A1-204ENST00000447376 TMEM150BA6NC51 233 aa18.27■□□□□ 0.52
SF3A1-204ENST00000447376 BMP15O95972 392 aa18.27■□□□□ 0.52
SF3A1-204ENST00000447376 CA3P07451 260 aa18.27■□□□□ 0.52
SF3A1-204ENST00000447376 PRPHP41219 470 aa18.27■□□□□ 0.52
SF3A1-204ENST00000447376 NPEPPSP55786 919 aa18.27■□□□□ 0.52
SF3A1-204ENST00000447376 PDIA5Q14554 519 aa18.27■□□□□ 0.52
SF3A1-204ENST00000447376 TCTN1Q2MV58 587 aa18.27■□□□□ 0.52
SF3A1-204ENST00000447376 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.27■□□□□ 0.52
SF3A1-204ENST00000447376 LINC01465Q8N7H1 131 aa18.27■□□□□ 0.52
SF3A1-204ENST00000447376 YME1L1Q96TA2 773 aa18.27■□□□□ 0.52
SF3A1-204ENST00000447376 GAS2L1Q99501 681 aaPredicted RBP18.27■□□□□ 0.52
SF3A1-204ENST00000447376 POLR3CQ9BUI4 534 aaPredicted RBP18.27■□□□□ 0.52
SF3A1-204ENST00000447376 GCOM2Q9BZD3 368 aaPredicted RBP18.27■□□□□ 0.52
SF3A1-204ENST00000447376 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.27■□□□□ 0.52
SF3A1-204ENST00000447376 DAXXQ9UER7 740 aaPredicted RBP18.27■□□□□ 0.52
SF3A1-204ENST00000447376 EVPLQ92817 2033 aa18.27■□□□□ 0.51
SF3A1-204ENST00000447376 UPP2O95045 317 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 STBD1O95210 358 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 STAG3L1P0CL83 205 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 XRCC6P12956 609 aaKnown RBP eCLIP18.26■□□□□ 0.51
SF3A1-204ENST00000447376 MUTP22033 750 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 TOB1P50616 345 aaPredicted RBP18.26■□□□□ 0.51
SF3A1-204ENST00000447376 KRT79Q5XKE5 535 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 FERMT3Q86UX7 667 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 ZNF410Q86VK4 478 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 RHPN2Q8IUC4 686 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 PSPC1Q8WXF1 523 aaKnown RBP18.26■□□□□ 0.51
SF3A1-204ENST00000447376 NACC1Q96RE7 527 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 MTRQ99707 1265 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 AGO3Q9H9G7 860 aaKnown RBP18.26■□□□□ 0.51
SF3A1-204ENST00000447376 WRAP73Q9P2S5 460 aaPredicted RBP18.26■□□□□ 0.51
SF3A1-204ENST00000447376 LRFN2Q9ULH4 789 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 MTMR6Q9Y217 621 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 YBX2Q9Y2T7 364 aaKnown RBP18.26■□□□□ 0.51
SF3A1-204ENST00000447376 MICAL3Q7RTP6 2002 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 SIP14410 1827 aa18.26■□□□□ 0.51
SF3A1-204ENST00000447376 IGKV6-21A0A0C4DH24 114 aa18.25■□□□□ 0.51
SF3A1-204ENST00000447376 GPR32O75388 356 aa18.25■□□□□ 0.51
SF3A1-204ENST00000447376 DGAT1O75907 488 aa18.25■□□□□ 0.51
SF3A1-204ENST00000447376 ZSCAN20P17040 1043 aaPredicted RBP18.25■□□□□ 0.51
SF3A1-204ENST00000447376 EIF4BP23588 611 aaKnown RBP18.25■□□□□ 0.51
SF3A1-204ENST00000447376 RPA1P27694 616 aa18.25■□□□□ 0.51
SF3A1-204ENST00000447376 ANP32AP39687 249 aaKnown RBP18.25■□□□□ 0.51
SF3A1-204ENST00000447376 CCT6AP40227 531 aaKnown RBP18.25■□□□□ 0.51
SF3A1-204ENST00000447376 GPC3P51654 580 aa18.25■□□□□ 0.51
SF3A1-204ENST00000447376 EMC2Q15006 297 aa18.25■□□□□ 0.51
SF3A1-204ENST00000447376 TOP1MTQ969P6 601 aa18.25■□□□□ 0.51
SF3A1-204ENST00000447376 TTYH1Q9H313 450 aaPredicted RBP18.25■□□□□ 0.51
SF3A1-204ENST00000447376 DHX33Q9H6R0 707 aaKnown RBP18.25■□□□□ 0.51
SF3A1-204ENST00000447376 ATP6V0A4Q9HBG4 840 aa18.25■□□□□ 0.51
SF3A1-204ENST00000447376 ST3GAL5Q9UNP4 418 aa18.25■□□□□ 0.51
SF3A1-204ENST00000447376 NOC2LQ9Y3T9 749 aaKnown RBP18.25■□□□□ 0.51
SF3A1-204ENST00000447376 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms