RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 RINT1Q6NUQ1 792 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 GPBP1Q86WP2 473 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 RETREG2Q8NC44 543 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 TIGD1Q96MW7 591 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 TNMDQ9H2S6 317 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 DHX33Q9H6R0 707 aaKnown RBP17.55■□□□□ 0.4
USP40-206ENST00000443711 ATP6V0A4Q9HBG4 840 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 BMP2KQ9NSY1 1161 aaPredicted RBP17.55■□□□□ 0.4
USP40-206ENST00000443711 KBTBD4Q9NVX7 518 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 DACT1Q9NYF0 836 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 TUBE1Q9UJT0 475 aa17.55■□□□□ 0.4
USP40-206ENST00000443711 MROH7Q68CQ1 1323 aa17.54■□□□□ 0.4
USP40-206ENST00000443711 MBLAC1A4D2B0 266 aaPredicted RBP17.54■□□□□ 0.4
USP40-206ENST00000443711 GAS2O43903 313 aaKnown RBP17.54■□□□□ 0.4
USP40-206ENST00000443711 USO1O60763 962 aaKnown RBP17.54■□□□□ 0.4
USP40-206ENST00000443711 MBD3O95983 291 aa17.54■□□□□ 0.4
USP40-206ENST00000443711 ATN1P54259 1190 aaPredicted RBP17.54■□□□□ 0.4
USP40-206ENST00000443711 ZNF200P98182 395 aaPredicted RBP17.54■□□□□ 0.4
USP40-206ENST00000443711 HIC1Q14526 733 aa17.54■□□□□ 0.4
USP40-206ENST00000443711 EMC2Q15006 297 aa17.54■□□□□ 0.4
USP40-206ENST00000443711 PTGISQ16647 500 aa17.54■□□□□ 0.4
USP40-206ENST00000443711 EFCAB12Q6NXP0 572 aa17.54■□□□□ 0.4
USP40-206ENST00000443711 C1orf186Q6ZWK4 172 aa17.54■□□□□ 0.4
USP40-206ENST00000443711 MCPH1Q8NEM0 835 aa17.54■□□□□ 0.4
USP40-206ENST00000443711 PDLIM7Q9NR12 457 aa17.54■□□□□ 0.4
USP40-206ENST00000443711 NOD1Q9Y239 953 aa17.54■□□□□ 0.4
USP40-206ENST00000443711 PCDHA2Q9Y5H9 948 aa17.54■□□□□ 0.4
USP40-206ENST00000443711 IGKV6-21A0A0C4DH24 114 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 TLR3O15455 904 aaKnown RBP17.53■□□□□ 0.4
USP40-206ENST00000443711 TREHO43280 583 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 KRT18P05783 430 aaKnown RBP17.53■□□□□ 0.4
USP40-206ENST00000443711 CYP2C9P11712 490 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 GUCY2CP25092 1073 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 TMOD1P28289 359 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 AFMP43652 599 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 DNM2P50570 870 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 SOX10P56693 466 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 SNX17Q15036 470 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 ARSHQ5FYA8 562 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 UBE2Q1Q7Z7E8 422 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 METTL13Q8N6R0 699 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 STAMQ92783 540 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 PAGE5Q96GU1 130 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 MTRQ99707 1265 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 RUSC1Q9BVN2 902 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 TIPINQ9BVW5 301 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 SUGCTQ9HAC7 445 aa17.53■□□□□ 0.4
USP40-206ENST00000443711 MYH11P35749 1972 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 SMIM35A0A1B0GVV1 85 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 MYMKA6NI61 221 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 IER5Q5VY09 327 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 TAF2Q6P1X5 1199 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 SH3RF1Q7Z6J0 888 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 GPT2Q8TD30 523 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 TCP11Q8WWU5 503 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 ZBTB10Q96DT7 871 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 TOX2Q96NM4 488 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 C7orf25Q9BPX7 421 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 TRPV6Q9H1D0 765 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 XPNPEP1Q9NQW7 623 aa17.52■□□□□ 0.4
USP40-206ENST00000443711 HOOK1Q9UJC3 728 aaKnown RBP17.52■□□□□ 0.4
USP40-206ENST00000443711 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.51■□□□□ 0.39
USP40-206ENST00000443711 DCDC2CA8MYV0 355 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 B4GALT4O60513 344 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 MYL1P05976 194 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 RTP1P59025 263 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 PTK7Q13308 1070 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 MAEAQ7L5Y9 396 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 DYMQ7RTS9 669 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 ANKRD33Q7Z3H0 272 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 SERINC5Q86VE9 423 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 FAM126BQ8IXS8 530 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 ELOA2Q8IYF1 753 aaPredicted RBP17.51■□□□□ 0.39
USP40-206ENST00000443711 LRRC71Q8N4P6 559 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 LINC01465Q8N7H1 131 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 DDX12PQ92771 950 aa17.51■□□□□ 0.39
USP40-206ENST00000443711 TRMT13Q9NUP7 481 aaKnown RBP17.51■□□□□ 0.39
USP40-206ENST00000443711 NPHP3-ACAD11A0A0J9YXS1 232 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 GTPBP6O43824 516 aaPredicted RBP17.5■□□□□ 0.39
USP40-206ENST00000443711 PQBP1O60828 265 aaKnown RBP17.5■□□□□ 0.39
USP40-206ENST00000443711 HIP1RO75146 1068 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 CD4P01730 458 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 RPLP2P05387 115 aaKnown RBP17.5■□□□□ 0.39
USP40-206ENST00000443711 CLCN3P51790 818 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 TLE2Q04725 743 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 RAD51AP2Q09MP3 1159 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 GIT2Q14161 759 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 NFKBIBQ15653 356 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 LRRC26Q2I0M4 334 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 TRIM60Q495X7 471 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 FAM102BQ5T8I3 360 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 CNNM4Q6P4Q7 775 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 RUFY4Q6ZNE9 571 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 RSPH3Q86UC2 560 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 GRAMD1CQ8IYS0 662 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 KIAA0319LQ8IZA0 1049 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 NME8Q8N427 588 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 KIFAP3Q92845 792 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 TMEM143Q96AN5 459 aa17.5■□□□□ 0.39
USP40-206ENST00000443711 DRC1Q96MC2 740 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms