RNA–Protein interactions for RNA: ENST00000440514.1

CPSF4-205, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-205ENST00000440514 MAFO75444 373 aaPredicted RBP20.16■□□□□ 0.82
CPSF4-205ENST00000440514 WDR5P61964 334 aaKnown RBP20.16■□□□□ 0.82
CPSF4-205ENST00000440514 DEFB103AP81534 67 aa20.16■□□□□ 0.82
CPSF4-205ENST00000440514 FOXD4L5Q5VV16 416 aaPredicted RBP20.16■□□□□ 0.82
CPSF4-205ENST00000440514 DTHD1Q6ZMT9 781 aa20.16■□□□□ 0.82
CPSF4-205ENST00000440514 ERMNQ8TAM6 284 aa20.16■□□□□ 0.82
CPSF4-205ENST00000440514 PIGOQ8TEQ8 1089 aa20.16■□□□□ 0.82
CPSF4-205ENST00000440514 FOXD4L4Q8WXT5 416 aaPredicted RBP20.16■□□□□ 0.82
CPSF4-205ENST00000440514 POLR3CQ9BUI4 534 aaPredicted RBP20.16■□□□□ 0.82
CPSF4-205ENST00000440514 AGO3Q9H9G7 860 aaKnown RBP20.16■□□□□ 0.82
CPSF4-205ENST00000440514 KDM3AQ9Y4C1 1321 aa20.16■□□□□ 0.82
CPSF4-205ENST00000440514 IGKV6-21A0A0C4DH24 114 aa20.15■□□□□ 0.82
CPSF4-205ENST00000440514 TMOD1P28289 359 aa20.15■□□□□ 0.82
CPSF4-205ENST00000440514 CD52P31358 61 aa20.15■□□□□ 0.82
CPSF4-205ENST00000440514 CCT6AP40227 531 aaKnown RBP20.15■□□□□ 0.82
CPSF4-205ENST00000440514 KCNJ6P48051 423 aa20.15■□□□□ 0.82
CPSF4-205ENST00000440514 POLGP54098 1239 aaPredicted RBP20.15■□□□□ 0.82
CPSF4-205ENST00000440514 SMAD3P84022 425 aaKnown RBP20.15■□□□□ 0.82
CPSF4-205ENST00000440514 IKBKEQ14164 716 aa20.15■□□□□ 0.82
CPSF4-205ENST00000440514 SF3A1Q15459 793 aaKnown RBP20.15■□□□□ 0.82
CPSF4-205ENST00000440514 HAUS3Q68CZ6 603 aa20.15■□□□□ 0.82
CPSF4-205ENST00000440514 TSHZ1Q6ZSZ6 1077 aa20.15■□□□□ 0.82
CPSF4-205ENST00000440514 OTUD6AQ7L8S5 288 aa20.15■□□□□ 0.82
CPSF4-205ENST00000440514 SNX29Q8TEQ0 813 aa20.15■□□□□ 0.82
CPSF4-205ENST00000440514 TMEM40Q8WWA1 233 aa20.15■□□□□ 0.82
CPSF4-205ENST00000440514 OSMRQ99650 979 aa20.15■□□□□ 0.82
CPSF4-205ENST00000440514 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.14■□□□□ 0.81
CPSF4-205ENST00000440514 ABHD14A-ACY1A0A1B0GW23 586 aa20.14■□□□□ 0.81
CPSF4-205ENST00000440514 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.14■□□□□ 0.81
CPSF4-205ENST00000440514 VWA3AA6NCI4 1184 aa20.14■□□□□ 0.81
CPSF4-205ENST00000440514 GPR32O75388 356 aa20.14■□□□□ 0.81
CPSF4-205ENST00000440514 ATP2A2P16615 1042 aaKnown RBP20.14■□□□□ 0.81
CPSF4-205ENST00000440514 RPA1P27694 616 aa20.14■□□□□ 0.81
CPSF4-205ENST00000440514 CDC25AP30304 524 aa20.14■□□□□ 0.81
CPSF4-205ENST00000440514 RFC5P40937 340 aa20.14■□□□□ 0.81
CPSF4-205ENST00000440514 EMC2Q15006 297 aa20.14■□□□□ 0.81
CPSF4-205ENST00000440514 TMCO2Q7Z6W1 182 aaPredicted RBP20.14■□□□□ 0.81
CPSF4-205ENST00000440514 CCDC43Q96MW1 224 aaKnown RBP20.14■□□□□ 0.81
CPSF4-205ENST00000440514 RAB34Q9BZG1 259 aa20.14■□□□□ 0.81
CPSF4-205ENST00000440514 DHX33Q9H6R0 707 aaKnown RBP20.14■□□□□ 0.81
CPSF4-205ENST00000440514 CLIC4Q9Y696 253 aa20.14■□□□□ 0.81
CPSF4-205ENST00000440514 PBX2P40425 430 aa20.13■□□□□ 0.81
CPSF4-205ENST00000440514 RARRES1P49788 294 aa20.13■□□□□ 0.81
CPSF4-205ENST00000440514 GPC3P51654 580 aa20.13■□□□□ 0.81
CPSF4-205ENST00000440514 RABGGTBP53611 331 aa20.13■□□□□ 0.81
CPSF4-205ENST00000440514 NLRP11P59045 1033 aaKnown RBP20.13■□□□□ 0.81
CPSF4-205ENST00000440514 PKP1Q13835 747 aa20.13■□□□□ 0.81
CPSF4-205ENST00000440514 PDIA5Q14554 519 aa20.13■□□□□ 0.81
CPSF4-205ENST00000440514 ECM1Q16610 540 aa20.13■□□□□ 0.81
CPSF4-205ENST00000440514 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.13■□□□□ 0.81
CPSF4-205ENST00000440514 SLC7A3Q8WY07 619 aa20.13■□□□□ 0.81
CPSF4-205ENST00000440514 SLC9A7Q96T83 725 aa20.13■□□□□ 0.81
CPSF4-205ENST00000440514 ANKEF1Q9NU02 776 aa20.13■□□□□ 0.81
CPSF4-205ENST00000440514 PPME1Q9Y570 386 aa20.13■□□□□ 0.81
CPSF4-205ENST00000440514 BMP15O95972 392 aa20.12■□□□□ 0.81
CPSF4-205ENST00000440514 CEBPZQ03701 1054 aaKnown RBP20.12■□□□□ 0.81
CPSF4-205ENST00000440514 PAK2Q13177 524 aa20.12■□□□□ 0.81
CPSF4-205ENST00000440514 ARL6IP4Q66PJ3 421 aaKnown RBP20.12■□□□□ 0.81
CPSF4-205ENST00000440514 APBB2Q92870 758 aa20.12■□□□□ 0.81
CPSF4-205ENST00000440514 TMEM143Q96AN5 459 aa20.12■□□□□ 0.81
CPSF4-205ENST00000440514 SCLT1Q96NL6 688 aa20.12■□□□□ 0.81
CPSF4-205ENST00000440514 JPH2Q9BR39 696 aaPredicted RBP20.12■□□□□ 0.81
CPSF4-205ENST00000440514 MMTAG2Q9BU76 263 aaKnown RBP20.12■□□□□ 0.81
CPSF4-205ENST00000440514 PBX4Q9BYU1 374 aa20.12■□□□□ 0.81
CPSF4-205ENST00000440514 ADAMTS10Q9H324 1103 aa20.12■□□□□ 0.81
CPSF4-205ENST00000440514 ZSCAN16Q9H4T2 348 aaPredicted RBP20.12■□□□□ 0.81
CPSF4-205ENST00000440514 XPNPEP1Q9NQW7 623 aa20.12■□□□□ 0.81
CPSF4-205ENST00000440514 SUCLA2Q9P2R7 463 aaPredicted RBP20.12■□□□□ 0.81
CPSF4-205ENST00000440514 PADI3Q9ULW8 664 aa20.12■□□□□ 0.81
CPSF4-205ENST00000440514 NOC2LQ9Y3T9 749 aaKnown RBP20.12■□□□□ 0.81
CPSF4-205ENST00000440514 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.11■□□□□ 0.81
CPSF4-205ENST00000440514 USO1O60763 962 aaKnown RBP20.11■□□□□ 0.81
CPSF4-205ENST00000440514 EFCAB14O75071 495 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 ZSCAN22P10073 491 aaPredicted RBP20.11■□□□□ 0.81
CPSF4-205ENST00000440514 DNAJB2P25686 324 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 DNM2P50570 870 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 CRYBB1P53674 252 aaPredicted RBP20.11■□□□□ 0.81
CPSF4-205ENST00000440514 GRIN1Q05586 938 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 PTPAQ15257 358 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 KRT79Q5XKE5 535 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 RHPN2Q8IUC4 686 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 KSR1Q8IVT5 923 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 HERC6Q8IVU3 1022 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 USP38Q8NB14 1042 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 NLRP7Q8WX94 980 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 LINC01599Q8WXQ3 324 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 NACC1Q96RE7 527 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 USP28Q96RU2 1077 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 MTRQ99707 1265 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 SQORQ9Y6N5 450 aa20.11■□□□□ 0.81
CPSF4-205ENST00000440514 RPS6KA5O75582 802 aa20.1■□□□□ 0.81
CPSF4-205ENST00000440514 FAM117BQ6P1L5 589 aa20.1■□□□□ 0.81
CPSF4-205ENST00000440514 Q7L0L9 218 aa20.1■□□□□ 0.81
CPSF4-205ENST00000440514 FAM228AQ86W67 206 aa20.1■□□□□ 0.81
CPSF4-205ENST00000440514 NLRP4Q96MN2 994 aa20.1■□□□□ 0.81
CPSF4-205ENST00000440514 ATP6V0A4Q9HBG4 840 aa20.1■□□□□ 0.81
CPSF4-205ENST00000440514 ERVK-5Q9HDB9 667 aa20.1■□□□□ 0.81
CPSF4-205ENST00000440514 DDX19AQ9NUU7 478 aaKnown RBP20.1■□□□□ 0.81
CPSF4-205ENST00000440514 DBR1Q9UK59 544 aaKnown RBP20.1■□□□□ 0.81
CPSF4-205ENST00000440514 KIAA1024Q9UPX6 916 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms