RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 MSS51Q4VC12 460 aa8.83□□□□□ -1
VPS50-204ENST00000438395 CEP55Q53EZ4 464 aa8.83□□□□□ -1
VPS50-204ENST00000438395 TCEAL5Q5H9L2 206 aa8.83□□□□□ -1
VPS50-204ENST00000438395 ODR4Q5SWX8 454 aa8.83□□□□□ -1
VPS50-204ENST00000438395 MCTP2Q6DN12 878 aa8.83□□□□□ -1
VPS50-204ENST00000438395 CENPQQ7L2Z9 268 aaPredicted RBP8.83□□□□□ -1
VPS50-204ENST00000438395 DHX32Q7L7V1 743 aaKnown RBP8.83□□□□□ -1
VPS50-204ENST00000438395 NPAS4Q8IUM7 802 aa8.83□□□□□ -1
VPS50-204ENST00000438395 CKAP2LQ8IYA6 745 aa8.83□□□□□ -1
VPS50-204ENST00000438395 PABPC5Q96DU9 382 aaKnown RBP8.83□□□□□ -1
VPS50-204ENST00000438395 CLDND1Q9NY35 253 aa8.83□□□□□ -1
VPS50-204ENST00000438395 GINS2Q9Y248 185 aa8.83□□□□□ -1
VPS50-204ENST00000438395 TELO2Q9Y4R8 837 aa8.83□□□□□ -1
VPS50-204ENST00000438395 NFASCO94856 1347 aa8.82□□□□□ -1
VPS50-204ENST00000438395 COL4A6Q14031 1691 aa8.82□□□□□ -1
VPS50-204ENST00000438395 DENND3A2RUS2 1198 aa8.82□□□□□ -1
VPS50-204ENST00000438395 SMCO2A6NFE2 343 aa8.82□□□□□ -1
VPS50-204ENST00000438395 SCG2P13521 617 aa8.82□□□□□ -1
VPS50-204ENST00000438395 ALADP13716 330 aa8.82□□□□□ -1
VPS50-204ENST00000438395 BMPR1AP36894 532 aa8.82□□□□□ -1
VPS50-204ENST00000438395 SREBF1P36956 1147 aa8.82□□□□□ -1
VPS50-204ENST00000438395 PLA2G5P39877 138 aa8.82□□□□□ -1
VPS50-204ENST00000438395 METAP2P50579 478 aaKnown RBP eCLIP8.82□□□□□ -1
VPS50-204ENST00000438395 RCAN1P53805 252 aa8.82□□□□□ -1
VPS50-204ENST00000438395 KRT76Q01546 638 aa8.82□□□□□ -1
VPS50-204ENST00000438395 TMEM62Q0P6H9 643 aa8.82□□□□□ -1
VPS50-204ENST00000438395 PLCB4Q15147 1175 aa8.82□□□□□ -1
VPS50-204ENST00000438395 SPOUT1Q5T280 376 aaKnown RBP8.82□□□□□ -1
VPS50-204ENST00000438395 MIS18BP1Q6P0N0 1132 aa8.82□□□□□ -1
VPS50-204ENST00000438395 PDXDC2PQ6P474 469 aa8.82□□□□□ -1
VPS50-204ENST00000438395 PLPPR4Q7Z2D5 763 aa8.82□□□□□ -1
VPS50-204ENST00000438395 PLA2G4DQ86XP0 818 aa8.82□□□□□ -1
VPS50-204ENST00000438395 FAM178BQ8IXR5 827 aa8.82□□□□□ -1
VPS50-204ENST00000438395 REXO1Q8N1G1 1221 aaKnown RBP8.82□□□□□ -1
VPS50-204ENST00000438395 PGBD1Q96JS3 809 aa8.82□□□□□ -1
VPS50-204ENST00000438395 TCEANC2Q96MN5 208 aa8.82□□□□□ -1
VPS50-204ENST00000438395 UIMC1Q96RL1 719 aa8.82□□□□□ -1
VPS50-204ENST00000438395 POP1Q99575 1024 aaKnown RBP8.82□□□□□ -1
VPS50-204ENST00000438395 USB1Q9BQ65 265 aaKnown RBP8.82□□□□□ -1
VPS50-204ENST00000438395 PLVAPQ9BX97 442 aa8.82□□□□□ -1
VPS50-204ENST00000438395 EPHX3Q9H6B9 360 aa8.82□□□□□ -1
VPS50-204ENST00000438395 BARHL2Q9NY43 387 aa8.82□□□□□ -1
VPS50-204ENST00000438395 RAPGEFL1Q9UHV5 662 aa8.82□□□□□ -1
VPS50-204ENST00000438395 PCDHA2Q9Y5H9 948 aa8.82□□□□□ -1
VPS50-204ENST00000438395 SQORQ9Y6N5 450 aa8.82□□□□□ -1
VPS50-204ENST00000438395 MUC6Q6W4X9 2439 aa8.82□□□□□ -1
VPS50-204ENST00000438395 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.81□□□□□ -1
VPS50-204ENST00000438395 SMIM35A0A1B0GVV1 85 aa8.81□□□□□ -1
VPS50-204ENST00000438395 FAM86C2PA6NEL3 165 aa8.81□□□□□ -1
VPS50-204ENST00000438395 C5orf67F2Z3F1 127 aa8.81□□□□□ -1
VPS50-204ENST00000438395 STXBP3O00186 592 aa8.81□□□□□ -1
VPS50-204ENST00000438395 ENPP3O14638 875 aa8.81□□□□□ -1
VPS50-204ENST00000438395 HBP1O60381 514 aa8.81□□□□□ -1
VPS50-204ENST00000438395 IL9P15248 144 aa8.81□□□□□ -1
VPS50-204ENST00000438395 USP46P62068 366 aa8.81□□□□□ -1
VPS50-204ENST00000438395 SETQ01105 290 aaPredicted RBP8.81□□□□□ -1
VPS50-204ENST00000438395 MGAT3Q09327 533 aa8.81□□□□□ -1
VPS50-204ENST00000438395 NFX1Q12986 1120 aaKnown RBP8.81□□□□□ -1
VPS50-204ENST00000438395 PAN2Q504Q3 1202 aaKnown RBP8.81□□□□□ -1
VPS50-204ENST00000438395 MARCH8Q5T0T0 291 aa8.81□□□□□ -1
VPS50-204ENST00000438395 JAKMIP3Q5VZ66 844 aa8.81□□□□□ -1
VPS50-204ENST00000438395 FAM43BQ6ZT52 329 aaPredicted RBP8.81□□□□□ -1
VPS50-204ENST00000438395 NIPA1Q7RTP0 329 aa8.81□□□□□ -1
VPS50-204ENST00000438395 CMTR2Q8IYT2 770 aaKnown RBP8.81□□□□□ -1
VPS50-204ENST00000438395 NME8Q8N427 588 aa8.81□□□□□ -1
VPS50-204ENST00000438395 TRAPPC12Q8WVT3 735 aa8.81□□□□□ -1
VPS50-204ENST00000438395 SCLT1Q96NL6 688 aa8.81□□□□□ -1
VPS50-204ENST00000438395 LRFN3Q9BTN0 628 aa8.81□□□□□ -1
VPS50-204ENST00000438395 CELF4Q9BZC1 486 aaKnown RBP8.81□□□□□ -1
VPS50-204ENST00000438395 OSBPL7Q9BZF2 842 aa8.81□□□□□ -1
VPS50-204ENST00000438395 UPF3BQ9BZI7 483 aaKnown RBP8.81□□□□□ -1
VPS50-204ENST00000438395 AGO4Q9HCK5 861 aaKnown RBP8.81□□□□□ -1
VPS50-204ENST00000438395 C6orf50Q9HD87 102 aa8.81□□□□□ -1
VPS50-204ENST00000438395 ZNF302Q9NR11 478 aa8.81□□□□□ -1
VPS50-204ENST00000438395 AAASQ9NRG9 546 aa8.81□□□□□ -1
VPS50-204ENST00000438395 PRKAG3Q9UGI9 489 aa8.81□□□□□ -1
VPS50-204ENST00000438395 PADI3Q9ULW8 664 aa8.81□□□□□ -1
VPS50-204ENST00000438395 SAMM50Q9Y512 469 aa8.81□□□□□ -1
VPS50-204ENST00000438395 MYH7BA7E2Y1 1941 aa8.81□□□□□ -1
VPS50-204ENST00000438395 REV3LO60673 3130 aa8.81□□□□□ -1
VPS50-204ENST00000438395 TCF20Q9UGU0 1960 aaKnown RBP8.81□□□□□ -1
VPS50-204ENST00000438395 IGSF9BQ9UPX0 1349 aa8.8□□□□□ -1
VPS50-204ENST00000438395 SIP14410 1827 aa8.8□□□□□ -1
VPS50-204ENST00000438395 MICAL3Q7RTP6 2002 aa8.8□□□□□ -1
VPS50-204ENST00000438395 IPO5O00410 1097 aaKnown RBP8.8□□□□□ -1
VPS50-204ENST00000438395 MEIS1O00470 390 aa8.8□□□□□ -1
VPS50-204ENST00000438395 GRM6O15303 877 aa8.8□□□□□ -1
VPS50-204ENST00000438395 RPS6KA5O75582 802 aa8.8□□□□□ -1
VPS50-204ENST00000438395 DGKIO75912 1065 aa8.8□□□□□ -1
VPS50-204ENST00000438395 MMP1P03956 469 aa8.8□□□□□ -1
VPS50-204ENST00000438395 ARP10275 920 aa8.8□□□□□ -1
VPS50-204ENST00000438395 NDUFV2P19404 249 aa8.8□□□□□ -1
VPS50-204ENST00000438395 GNA11P29992 359 aa8.8□□□□□ -1
VPS50-204ENST00000438395 NDUFV1P49821 464 aa8.8□□□□□ -1
VPS50-204ENST00000438395 ITGB3BPQ13352 177 aaPredicted RBP8.8□□□□□ -1
VPS50-204ENST00000438395 CLUL1Q15846 466 aa8.8□□□□□ -1
VPS50-204ENST00000438395 TMEM266Q2M3C6 531 aa8.8□□□□□ -1
VPS50-204ENST00000438395 NAALADL2Q58DX5 795 aa8.8□□□□□ -1
VPS50-204ENST00000438395 ZNF484Q5JVG2 852 aa8.8□□□□□ -1
VPS50-204ENST00000438395 BLOC1S2Q6QNY1 142 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms