RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 ADGRL3Q9HAR2 1447 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 CREB3O43889 395 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 HOXC10Q9NYD6 342 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 NCF2P19878 526 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 DR1Q01658 176 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 DPCR1Q3MIW9 517 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 ANKRD20A4Q4UJ75 823 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 ANKRD20A8PQ5CZ79 823 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 ANKRD20A2Q5SQ80 823 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 ANKRD20A1Q5TYW2 823 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 HAUS4Q9H6D7 363 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 SOWAHDA6NJG2 315 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 ZBTB5O15062 677 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 HUS1O60921 280 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 EEF1B2P24534 225 aaKnown RBP12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 SLCO1A2P46721 670 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 NOP14P78316 857 aaKnown RBP12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 SLC39A14Q15043 492 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 PTPN21Q16825 1174 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 E5RI56 91 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 SNX2O60749 519 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 ESRRBO95718 433 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 CDC25AP30304 524 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 TMCC1O94876 653 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 TNFAIP2Q03169 654 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 DRP2Q13474 957 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 TBC1D9BQ66K14 1250 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 TJP3O95049 919 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 TAF1BQ53T94 588 aaPredicted RBP12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 TRMT10CQ7L0Y3 403 aaKnown RBP12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 OTUD5Q96G74 571 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 FMO2Q99518 471 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 POLR3FQ9H1D9 316 aaPredicted RBP12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 TRPC7Q9HCX4 862 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 TSR3Q9UJK0 312 aaKnown RBP12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 SERPING1P05155 500 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 CDC25BP30305 580 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 LRRC63Q05C16 580 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 SETBP1Q9Y6X0 1596 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 CA4P22748 312 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 ZBTB41Q5SVQ8 909 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 SCHIP1Q9P0W5 487 aaPredicted RBP12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 KIF17Q9P2E2 1029 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 TEKT2Q9UIF3 430 aa12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 BZW1Q7L1Q6 419 aaKnown RBP12.92□□□□□ -0.34
CCDC88A-207ENST00000436346 A0A1W2PQ27 194 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 A0A1W2PQ64 194 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 A0A1W2PQD8 194 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 FTCDO95954 541 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 PSMD2Q13200 908 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 STXBP2Q15833 593 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 ZNF667Q5HYK9 610 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 KLC2Q9H0B6 622 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 AFF2P51816 1311 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 WDR91A4D1P6 747 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 EPB41L5Q9HCM4 733 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 INTS9Q9NV88 658 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 NEDD4P46934 1319 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 FAM95CA0A1B0GW59 222 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 APOEP02649 317 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 TMEM270Q6UE05 265 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 EMILIN3Q9NT22 766 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 DIP2AQ14689 1571 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 DFFAO00273 331 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 RBBP7Q16576 425 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 RASSF3Q86WH2 238 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 NGRNQ9NPE2 291 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 IGSF1Q8N6C5 1336 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 TAC1P20366 129 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 DHX9Q08211 1270 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 FAF2Q96CS3 445 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 KRT82Q9NSB4 513 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 EIF4A3P38919 411 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 GPC3P51654 580 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 AP1B1Q10567 949 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 ERICH1Q86X53 443 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 SRRM1Q8IYB3 904 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 COG4Q9H9E3 785 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 SP110Q9HB58 689 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 SARS2Q9NP81 518 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 HEY1Q9Y5J3 304 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 RNF123Q5XPI4 1314 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 SFI1A8K8P3 1242 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 PRPF3O43395 683 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 LRRC31Q6UY01 552 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 KLHL8Q9P2G9 620 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 CYP27A1Q02318 531 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 CAPRIN1Q14444 709 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 MAPK6Q16659 721 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 ZNF335Q9H4Z2 1342 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 PPP1R9AQ9ULJ8 1098 aa12.91□□□□□ -0.34
CCDC88A-207ENST00000436346 CALB1P05937 261 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 NME3Q13232 169 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 PIP4K2CQ8TBX8 421 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 LZICQ8WZA0 190 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 SLC7A5P2Q9GIP4 190 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 THAP9Q9H5L6 903 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 PCDHA13Q9Y5I0 950 aa12.9□□□□□ -0.34
CCDC88A-207ENST00000436346 PLEKHA8P1O95397 391 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms