RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 ECM1Q16610 540 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 FAM43BQ6ZT52 329 aaPredicted RBP12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 FITM2Q8N6M3 262 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 PGM2Q96G03 612 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 RAB34Q9BZG1 259 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 GANQ9H2C0 597 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 EPB41L4BQ9H329 900 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 CORO1CQ9ULV4 474 aaPredicted RBP12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 TIAM2Q8IVF5 1701 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 NUP188Q5SRE5 1749 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 ACSL3O95573 720 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 LINGO3P0C6S8 592 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 GRM4Q14833 912 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 GALNT17Q6IS24 598 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 BARGINQ6ZT62 677 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 TAOK1Q7L7X3 1001 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 JAMLQ86YT9 394 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 RBM46Q8TBY0 533 aaKnown RBP12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 PIGSQ96S52 555 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 TSC22D3Q99576 134 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 EMILIN3Q9NT22 766 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 ZFATQ9P243 1243 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 SUCLA2Q9P2R7 463 aaPredicted RBP12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 PHRF1Q9P1Y6 1649 aaKnown RBP12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 SNUPNO95149 360 aaKnown RBP12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 COBLL1Q53SF7 1204 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 C10orf76Q5T2E6 689 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 GLYCTKQ8IVS8 523 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 SLC35G2Q8TBE7 412 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 COA7Q96BR5 231 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 TBK1Q9UHD2 729 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 DPPA5A6NC42 116 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 AGTP01019 485 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 ATF3P18847 181 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 ATP4AP20648 1035 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 PSMD2Q13200 908 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 BLMHQ13867 455 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 TMEM47Q9BQJ4 181 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 ZCWPW1Q9H0M4 648 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 HOMER3Q9NSC5 361 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 ETAA1Q9NY74 926 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 MTRF1LQ9UGC7 380 aaKnown RBP12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 SAP30BPQ9UHR5 308 aaKnown RBP12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 ZMYND8Q9ULU4 1186 aaPredicted RBP12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 FER1L4A9Z1Z3 1794 aa12.5□□□□□ -0.41
HMGCS1-202ENST00000433297 TMEM120BA0PK00 339 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 NEFHP12036 1026 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 SLC30A9Q6PML9 568 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 FAM47EQ6ZV65 393 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 DGKHQ86XP1 1220 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 ARHGEF2Q92974 986 aaKnown RBP12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 NSUN4Q96CB9 384 aaKnown RBP12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 KCNMB3Q9NPA1 279 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 NKX1-2Q9UD57 310 aaPredicted RBP12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 ARMCX3Q9UH62 379 aaPredicted RBP12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 CHORDC1Q9UHD1 332 aaPredicted RBP12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 RASAL2Q9UJF2 1139 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 KIAA1024Q9UPX6 916 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 GNA14O95837 355 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 GNAT1P11488 350 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 RAD23BP54727 409 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 KLRC3Q07444 240 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 DUPD1Q68J44 220 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 SPATA21Q7Z572 469 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 EXOC3L1Q86VI1 746 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 VSIG1Q86XK7 387 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 RASGEF1CQ8N431 466 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 DAGLBQ8NCG7 672 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 RMDN2Q96LZ7 410 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 DDX23Q9BUQ8 820 aaKnown RBP12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 ZDHHC18Q9NUE0 388 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 DDX3XO00571 662 aaKnown RBP eCLIP12.49□□□□□ -0.411e-15■■□□□ 13.2
HMGCS1-202ENST00000433297 LUC7L3O95232 432 aaKnown RBP12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 GH1P01241 217 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 NUDT17P0C025 328 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 ZNF131P52739 623 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 SESN3P58005 492 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 PTENP60484 403 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 BNIP1Q12981 228 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 SEPT14Q6ZU15 432 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 CCDC65Q8IXS2 484 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 FBF1Q8TES7 1133 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 TRIM7Q9C029 511 aa12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 AJAP1Q9UKB5 411 aaPredicted RBP12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 BZW2Q9Y6E2 419 aaKnown RBP12.49□□□□□ -0.41
HMGCS1-202ENST00000433297 DUOX1Q9NRD9 1551 aa12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 LRRD1A4D1F6 860 aa12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 XRCC5P13010 732 aaKnown RBP12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 PECAM1P16284 738 aaPredicted RBP12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 KLRK1P26718 216 aa12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 PON1P27169 355 aa12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 RPL21P46778 160 aaKnown RBP12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 KCNJ1P48048 391 aa12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 RWDD2BP57060 319 aa12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 AUHQ13825 339 aaKnown RBP12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 TNIP1Q15025 636 aa12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 ZCWPW2Q504Y3 356 aa12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 LONP2Q86WA8 852 aa12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 GPBP1Q86WP2 473 aa12.48□□□□□ -0.41
HMGCS1-202ENST00000433297 CCDC105Q8IYK2 499 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms