RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 THNSL1Q8IYQ7 743 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 LRRC71Q8N4P6 559 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 MICAL1Q8TDZ2 1067 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 CRYGNQ8WXF5 182 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 MAP7D2Q96T17 732 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 NCOA5Q9HCD5 579 aaKnown RBP16.42■□□□□ 0.22
SDC1-204ENST00000429035 AAASQ9NRG9 546 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 PRKAG3Q9UGI9 489 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 CEP131Q9UPN4 1083 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 PCDHB12Q9Y5F1 795 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 PCDHA10Q9Y5I2 948 aa16.42■□□□□ 0.22
SDC1-204ENST00000429035 WDR64B1ANS9 1081 aa16.41■□□□□ 0.22
SDC1-204ENST00000429035 GAS7O60861 476 aa16.41■□□□□ 0.22
SDC1-204ENST00000429035 PSMA5P28066 241 aa16.41■□□□□ 0.22
SDC1-204ENST00000429035 CRYBB1P53674 252 aaPredicted RBP16.41■□□□□ 0.22
SDC1-204ENST00000429035 NLRP5P59047 1200 aa16.41■□□□□ 0.22
SDC1-204ENST00000429035 PRKCEQ02156 737 aa16.41■□□□□ 0.22
SDC1-204ENST00000429035 CAMK1Q14012 370 aa16.41■□□□□ 0.22
SDC1-204ENST00000429035 FAM102BQ5T8I3 360 aa16.41■□□□□ 0.22
SDC1-204ENST00000429035 SLC24A5Q71RS6 500 aa16.41■□□□□ 0.22
SDC1-204ENST00000429035 CCDC136Q96JN2 1154 aa16.41■□□□□ 0.22
SDC1-204ENST00000429035 FAM167AQ96KS9 214 aa16.41■□□□□ 0.22
SDC1-204ENST00000429035 POP1Q99575 1024 aaKnown RBP16.41■□□□□ 0.22
SDC1-204ENST00000429035 RNF26Q9BY78 433 aaPredicted RBP16.41■□□□□ 0.22
SDC1-204ENST00000429035 ATP6V0A4Q9HBG4 840 aa16.41■□□□□ 0.22
SDC1-204ENST00000429035 RGS18Q9NS28 235 aa16.41■□□□□ 0.22
SDC1-204ENST00000429035 RNF216Q9NWF9 866 aaPredicted RBP16.41■□□□□ 0.22
SDC1-204ENST00000429035 BARX2Q9UMQ3 279 aaPredicted RBP16.41■□□□□ 0.22
SDC1-204ENST00000429035 MAFBQ9Y5Q3 323 aaPredicted RBP16.41■□□□□ 0.22
SDC1-204ENST00000429035 PRR33A8MZF0 331 aa16.4■□□□□ 0.22
SDC1-204ENST00000429035 REC8O95072 547 aa16.4■□□□□ 0.22
SDC1-204ENST00000429035 OATP04181 439 aa16.4■□□□□ 0.22
SDC1-204ENST00000429035 SMAD2Q15796 467 aaKnown RBP16.4■□□□□ 0.22
SDC1-204ENST00000429035 LRCH2Q5VUJ6 765 aa16.4■□□□□ 0.22
SDC1-204ENST00000429035 EFCAB12Q6NXP0 572 aa16.4■□□□□ 0.22
SDC1-204ENST00000429035 CRIPAKQ8N1N5 446 aa16.4■□□□□ 0.22
SDC1-204ENST00000429035 RNF169Q8NCN4 708 aa16.4■□□□□ 0.22
SDC1-204ENST00000429035 KCNB2Q92953 911 aa16.4■□□□□ 0.22
SDC1-204ENST00000429035 TEKT3Q9BXF9 490 aa16.4■□□□□ 0.22
SDC1-204ENST00000429035 C9IYK1 514 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 MSH4O15457 936 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 MAGEB2O15479 319 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 GPR32O75388 356 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 FGF18O76093 207 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 TMOD1P28289 359 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 CIITAP33076 1130 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 NLRP11P59045 1033 aaKnown RBP16.39■□□□□ 0.21
SDC1-204ENST00000429035 ADAM15Q13444 863 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 UGCGQ16739 394 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 PLPP4Q5VZY2 271 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 TRIM22Q8IYM9 498 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 ABI1Q8IZP0 508 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 COLGALT1Q8NBJ5 622 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 GJA10Q969M2 543 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 UPF3BQ9BZI7 483 aaKnown RBP16.39■□□□□ 0.21
SDC1-204ENST00000429035 TLE6Q9H808 572 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 TLR9Q9NR96 1032 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 DISC1Q9NRI5 854 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 SEPT9Q9UHD8 586 aaPredicted RBP16.39■□□□□ 0.21
SDC1-204ENST00000429035 MUTYHQ9UIF7 546 aa16.39■□□□□ 0.21
SDC1-204ENST00000429035 C5orf42Q9H799 3197 aa16.38■□□□□ 0.21
SDC1-204ENST00000429035 CPLX1O14810 134 aa16.38■□□□□ 0.21
SDC1-204ENST00000429035 PER2O15055 1255 aa16.38■□□□□ 0.21
SDC1-204ENST00000429035 ZSCAN20P17040 1043 aaPredicted RBP16.38■□□□□ 0.21
SDC1-204ENST00000429035 IFNAR1P17181 557 aa16.38■□□□□ 0.21
SDC1-204ENST00000429035 LAG3P18627 525 aa16.38■□□□□ 0.21
SDC1-204ENST00000429035 SSRP1Q08945 709 aaKnown RBP16.38■□□□□ 0.21
SDC1-204ENST00000429035 STK3Q13188 491 aa16.38■□□□□ 0.21
SDC1-204ENST00000429035 NTRK3Q16288 839 aa16.38■□□□□ 0.21
SDC1-204ENST00000429035 EFHBQ8N7U6 833 aa16.38■□□□□ 0.21
SDC1-204ENST00000429035 NLRP7Q8WX94 980 aa16.38■□□□□ 0.21
SDC1-204ENST00000429035 LENG9Q96B70 501 aa16.38■□□□□ 0.21
SDC1-204ENST00000429035 LARP6Q9BRS8 491 aaKnown RBP16.38■□□□□ 0.21
SDC1-204ENST00000429035 UNC45AQ9H3U1 944 aa16.38■□□□□ 0.21
SDC1-204ENST00000429035 TYW1Q9NV66 732 aaKnown RBP16.38■□□□□ 0.21
SDC1-204ENST00000429035 TMEM161AQ9NX61 479 aa16.38■□□□□ 0.21
SDC1-204ENST00000429035 C19orf67A6NJJ6 358 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 ZNF862O60290 1169 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 GLP2RO95838 553 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 FGFR4P22455 802 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 PDIA3P30101 505 aaKnown RBP16.37■□□□□ 0.21
SDC1-204ENST00000429035 CA8P35219 290 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 JAK3P52333 1124 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 TBC1D8BQ0IIM8 1120 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 MTERF2Q49AM1 385 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 MIER3Q7Z3K6 550 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 TBCKQ8TEA7 893 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 AGXT2Q9BYV1 514 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 ENTPD7Q9NQZ7 604 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 NRBP2Q9NSY0 501 aa16.37■□□□□ 0.21
SDC1-204ENST00000429035 HOXA2O43364 376 aa16.36■□□□□ 0.21
SDC1-204ENST00000429035 TDP2O95551 362 aa16.36■□□□□ 0.21
SDC1-204ENST00000429035 SFNP31947 248 aa16.36■□□□□ 0.21
SDC1-204ENST00000429035 PBX3P40426 434 aa16.36■□□□□ 0.21
SDC1-204ENST00000429035 RBM10P98175 930 aaKnown RBP16.36■□□□□ 0.21
SDC1-204ENST00000429035 UBE3AQ05086 875 aa16.36■□□□□ 0.21
SDC1-204ENST00000429035 LRRC43Q8N309 656 aa16.36■□□□□ 0.21
SDC1-204ENST00000429035 MSLNLQ96KJ4 702 aa16.36■□□□□ 0.21
SDC1-204ENST00000429035 TMEM117Q9H0C3 514 aa16.36■□□□□ 0.21
SDC1-204ENST00000429035 CLEC1BQ9P126 229 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms