RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 CXXC5Q7LFL8 322 aaKnown RBP5.67□□□□□ -1.5
USP40-204ENST00000427947 OTOP2Q7RTS6 562 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 CXorf67Q86X51 503 aaPredicted RBP5.67□□□□□ -1.5
USP40-204ENST00000427947 CMIPQ8IY22 773 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 LRRC56Q8IYG6 542 aaPredicted RBP5.67□□□□□ -1.5
USP40-204ENST00000427947 CARFQ8N187 725 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 RPGRQ92834 1020 aaKnown RBP5.67□□□□□ -1.5
USP40-204ENST00000427947 TOX2Q96NM4 488 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 SPATA25Q9BR10 227 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 ANO3Q9BYT9 981 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 TRIM8Q9BZR9 551 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 FTSJ1Q9UET6 329 aa5.67□□□□□ -1.5
USP40-204ENST00000427947 CYP1A1P04798 512 aaPredicted RBP5.66□□□□□ -1.5
USP40-204ENST00000427947 CLEC2LP0C7M8 214 aa5.66□□□□□ -1.5
USP40-204ENST00000427947 SCAND1P57086 179 aa5.66□□□□□ -1.5
USP40-204ENST00000427947 MAP3K12Q12852 859 aa5.66□□□□□ -1.5
USP40-204ENST00000427947 MOGSQ13724 837 aa5.66□□□□□ -1.5
USP40-204ENST00000427947 PDCD1Q15116 288 aa5.66□□□□□ -1.5
USP40-204ENST00000427947 GRAMD4Q6IC98 578 aa5.66□□□□□ -1.5
USP40-204ENST00000427947 UNQ6494/PRO21346Q6UXR6 183 aa5.66□□□□□ -1.5
USP40-204ENST00000427947 FERMT3Q86UX7 667 aa5.66□□□□□ -1.5
USP40-204ENST00000427947 KCNG1Q9UIX4 513 aa5.66□□□□□ -1.5
USP40-204ENST00000427947 TRHDEQ9UKU6 1024 aa5.66□□□□□ -1.5
USP40-204ENST00000427947 PPP2R3BQ9Y5P8 575 aa5.66□□□□□ -1.5
USP40-204ENST00000427947 WASHC2CQ9Y4E1 1318 aa5.66□□□□□ -1.5
USP40-204ENST00000427947 DBX1A6NMT0 343 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 GOLGA8AA7E2F4 631 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 GOLGA8BA8MQT2 603 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 KLHL18O94889 574 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 CFPP27918 469 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 MANFP55145 182 aaKnown RBP5.65□□□□□ -1.5
USP40-204ENST00000427947 BCAR1P56945 870 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 ERVK-21P61565 698 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 NFATC3Q12968 1075 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 BRDTQ58F21 947 aaPredicted RBP5.65□□□□□ -1.5
USP40-204ENST00000427947 CCDC62Q6P9F0 684 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 KANSL1Q7Z3B3 1105 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 TP53I13Q8NBR0 393 aaPredicted RBP5.65□□□□□ -1.5
USP40-204ENST00000427947 NUDT10Q8NFP7 164 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 ADAMTS17Q8TE56 1095 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 TGFBRAP1Q8WUH2 860 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 NUDT11Q96G61 164 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 YTHDC1Q96MU7 727 aaKnown RBP5.65□□□□□ -1.5
USP40-204ENST00000427947 SMAD5Q99717 465 aaKnown RBP5.65□□□□□ -1.5
USP40-204ENST00000427947 TMEM168Q9H0V1 697 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 CCDC8Q9H0W5 538 aaPredicted RBP5.65□□□□□ -1.5
USP40-204ENST00000427947 MTG2Q9H4K7 406 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 DDX56Q9NY93 547 aaKnown RBP5.65□□□□□ -1.5
USP40-204ENST00000427947 FBXO10Q9UK96 956 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 CDC42EP3Q9UKI2 254 aa5.65□□□□□ -1.5
USP40-204ENST00000427947 WASHC2AQ641Q2 1341 aa5.65□□□□□ -1.51
USP40-204ENST00000427947 PRSS38A1L453 326 aa5.64□□□□□ -1.51
USP40-204ENST00000427947 PCDH8O95206 1070 aa5.64□□□□□ -1.51
USP40-204ENST00000427947 KCNQ1P51787 676 aa5.64□□□□□ -1.51
USP40-204ENST00000427947 CT83Q5H943 113 aa5.64□□□□□ -1.51
USP40-204ENST00000427947 SYDE2Q5VT97 1194 aa5.64□□□□□ -1.51
USP40-204ENST00000427947 TMEM200BQ69YZ2 307 aa5.64□□□□□ -1.51
USP40-204ENST00000427947 ZNF761Q86XN6 746 aaPredicted RBP5.64□□□□□ -1.51
USP40-204ENST00000427947 OR5AN1Q8NGI8 311 aa5.64□□□□□ -1.51
USP40-204ENST00000427947 ZSCAN18Q8TBC5 510 aaPredicted RBP5.64□□□□□ -1.51
USP40-204ENST00000427947 STAG1Q8WVM7 1258 aa5.64□□□□□ -1.51
USP40-204ENST00000427947 LMBR1Q8WVP7 490 aa5.64□□□□□ -1.51
USP40-204ENST00000427947 ACAP3Q96P50 834 aa5.64□□□□□ -1.51
USP40-204ENST00000427947 MENTQ9BUN1 341 aa5.64□□□□□ -1.51
USP40-204ENST00000427947 TYW1Q9NV66 732 aaKnown RBP5.64□□□□□ -1.51
USP40-204ENST00000427947 KCMF1Q9P0J7 381 aa5.64□□□□□ -1.51
USP40-204ENST00000427947 A0A0G2JNJ9 132 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 K7ESF4 209 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 MAFO75444 373 aaPredicted RBP5.63□□□□□ -1.51
USP40-204ENST00000427947 HMGCRP04035 888 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 PDGFRBP09619 1106 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 POLD1P28340 1107 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 IARSP41252 1262 aaKnown RBP5.63□□□□□ -1.51
USP40-204ENST00000427947 SLURP1P55000 103 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 EXOSC10Q01780 885 aaKnown RBP5.63□□□□□ -1.51
USP40-204ENST00000427947 KLF1Q13351 362 aaPredicted RBP5.63□□□□□ -1.51
USP40-204ENST00000427947 TOP3AQ13472 1001 aaPredicted RBP5.63□□□□□ -1.51
USP40-204ENST00000427947 DGKDQ16760 1214 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 RGL3Q3MIN7 710 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 FAM26FQ5R3K3 315 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 C1QL4Q86Z23 238 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 IFNL2Q8IZJ0 200 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 TXNDC5Q8NBS9 432 aaKnown RBP5.63□□□□□ -1.51
USP40-204ENST00000427947 ASPSCR1Q9BZE9 553 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 BARX1Q9HBU1 254 aaPredicted RBP5.63□□□□□ -1.51
USP40-204ENST00000427947 Q9UFV3 132 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 MAGEL2Q9UJ55 1249 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 MYPNQ86TC9 1320 aa5.63□□□□□ -1.51
USP40-204ENST00000427947 MAFGO15525 162 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 CUTAO60888 179 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 OPHN1O60890 802 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 MT-CO1P00395 513 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 LPLP06858 475 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 PFKMP08237 780 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 ENPP1P22413 925 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 ETV4P43268 484 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 STAT5BP51692 787 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 FSCN1Q16658 493 aaKnown RBP5.62□□□□□ -1.51
USP40-204ENST00000427947 UGT8Q16880 541 aa5.62□□□□□ -1.51
USP40-204ENST00000427947 ABCB5Q2M3G0 1257 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms