RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 C9IYK1 514 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 CHMP2AO43633 222 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 MGEA5O60502 916 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 GPR32O75388 356 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 CDKL5O76039 1030 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 VTNP04004 478 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 CLCN3P51790 818 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 HYAL1Q12794 435 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 CTC1Q2NKJ3 1217 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 Q4G0T1 1027 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 MOXD1Q6UVY6 613 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 EP400NLQ6ZTU2 488 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 FAM228AQ86W67 206 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 BLIDQ8IZY5 108 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 GJD3Q8N144 294 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 LINC01465Q8N7H1 131 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 PPP1R16BQ96T49 567 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 CDHR5Q9HBB8 845 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 NRBP2Q9NSY0 501 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 PDRG1Q9NUG6 133 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 AKT3Q9Y243 479 aa13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 FNDC1Q4ZHG4 1894 aaPredicted RBP13.04□□□□□ -0.32
SQSTM1-203ENST00000422245 CYP3A7-CYP3A51PA0A087WV96 503 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 EDIL3O43854 480 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 ZNF862O60290 1169 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 PSMD10O75832 226 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 ITGB1P05556 798 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 IBSPP21815 317 aaPredicted RBP13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 CYP3A7P24462 503 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 SSTR3P32745 418 aaPredicted RBP13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 GATMP50440 423 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 TMEM31Q5JXX7 168 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 TRMT1LQ7Z2T5 733 aaKnown RBP13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 KRT25Q7Z3Z0 450 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 KLHL23Q8NBE8 558 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 UNC45AQ9H3U1 944 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 EPHX3Q9H6B9 360 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 ELAC1Q9H777 363 aaKnown RBP13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 ATP6V0A4Q9HBG4 840 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 ALG13Q9NP73 1137 aaKnown RBP13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 AAASQ9NRG9 546 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 TMEM161AQ9NX61 479 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 PRKAG3Q9UGI9 489 aa13.03□□□□□ -0.32
SQSTM1-203ENST00000422245 TBKBP1A7MCY6 615 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 M0R2N6 131 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 HOXA2O43364 376 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 CSPG5O95196 566 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 TDP2O95551 362 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 NLRP11P59045 1033 aaKnown RBP13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 UBE3AQ05086 875 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 TBC1D8BQ0IIM8 1120 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 STK3Q13188 491 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 CAMK1Q14012 370 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 DSC3Q14574 896 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 NONOQ15233 471 aaKnown RBP eCLIP13.02□□□□□ -0.332e-8■■■■□ 21.7
SQSTM1-203ENST00000422245 NPY5RQ15761 445 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 UGCGQ16739 394 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 CSPP1Q1MSJ5 1256 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 EFCAB12Q6NXP0 572 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 MIER3Q7Z3K6 550 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 LRRC71Q8N4P6 559 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 SPPL3Q8TCT6 385 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 MBOAT7Q96N66 472 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 SCLT1Q96NL6 688 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 ADAMTS10Q9H324 1103 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 CD320Q9NPF0 282 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 PCDHB12Q9Y5F1 795 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 STK36Q9NRP7 1315 aa13.02□□□□□ -0.33
SQSTM1-203ENST00000422245 PI4K2BG5E9Z4 385 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 TBX10O75333 385 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 XBP1P17861 261 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 LAG3P18627 525 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 EIF4BP23588 611 aaKnown RBP13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 LTBRP36941 435 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 GPC3P51654 580 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 FAM189BP81408 668 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 ZP2Q05996 745 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 SMAD4Q13485 552 aaKnown RBP13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 XKR3Q5GH77 459 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 SPOUT1Q5T280 376 aaKnown RBP13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 B3GNT9Q6UX72 402 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 ETNPPLQ8TBG4 499 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 POF1BQ8WVV4 589 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 KHSRPQ92945 711 aaKnown RBP eCLIP13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 SEPT9Q9UHD8 586 aaPredicted RBP13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 DDX25Q9UHL0 483 aaKnown RBP13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 PLXNA4Q9HCM2 1894 aa13.01□□□□□ -0.33
SQSTM1-203ENST00000422245 CCDC194A0A1B0GVG4 234 aa13□□□□□ -0.33
SQSTM1-203ENST00000422245 FSD2A1L4K1 749 aa13□□□□□ -0.33
SQSTM1-203ENST00000422245 GPR37L1O60883 481 aa13□□□□□ -0.33
SQSTM1-203ENST00000422245 FGFR1P11362 822 aa13□□□□□ -0.33
SQSTM1-203ENST00000422245 ALADP13716 330 aa13□□□□□ -0.33
SQSTM1-203ENST00000422245 DARSP14868 501 aaKnown RBP13□□□□□ -0.33
SQSTM1-203ENST00000422245 GCFC2P16383 781 aaKnown RBP13□□□□□ -0.33
SQSTM1-203ENST00000422245 ZSCAN20P17040 1043 aaPredicted RBP13□□□□□ -0.33
SQSTM1-203ENST00000422245 DNAJB1P25685 340 aa13□□□□□ -0.33
SQSTM1-203ENST00000422245 NDUFV1P49821 464 aa13□□□□□ -0.33
SQSTM1-203ENST00000422245 ANAPC15P60006 121 aa13□□□□□ -0.33
SQSTM1-203ENST00000422245 CDC42EP1Q00587 391 aa13□□□□□ -0.33
SQSTM1-203ENST00000422245 TARBP2Q15633 366 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms