RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 KANK3Q6NY19 840 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 MIS18BP1Q6P0N0 1132 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 SLC24A5Q71RS6 500 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 LRRC71Q8N4P6 559 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 FEZF2Q8TBJ5 459 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 CRYGNQ8WXF5 182 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 GJA10Q969M2 543 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 CASD1Q96PB1 797 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 ZNF577Q9BSK1 485 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 PHF7Q9BWX1 381 aaPredicted RBP9.21□□□□□ -0.94
VIM-202ENST00000421459 S1PR5Q9H228 398 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 TLR9Q9NR96 1032 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 FAM86C1Q9NVL1 165 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 RBM28Q9NW13 759 aaKnown RBP9.21□□□□□ -0.94
VIM-202ENST00000421459 PCDHB12Q9Y5F1 795 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 TTC3P53804 2025 aa9.21□□□□□ -0.94
VIM-202ENST00000421459 GPR182O15218 404 aa9.2□□□□□ -0.94
VIM-202ENST00000421459 PDGFBP01127 241 aaPredicted RBP9.2□□□□□ -0.94
VIM-202ENST00000421459 RPLP2P05387 115 aaKnown RBP9.2□□□□□ -0.94
VIM-202ENST00000421459 TECP42680 631 aa9.2□□□□□ -0.94
VIM-202ENST00000421459 CRYBB1P53674 252 aaPredicted RBP9.2□□□□□ -0.94
VIM-202ENST00000421459 VCPP55072 806 aaKnown RBP9.2□□□□□ -0.94
VIM-202ENST00000421459 NLRP11P59045 1033 aaKnown RBP9.2□□□□□ -0.94
VIM-202ENST00000421459 TCF15Q12870 199 aa9.2□□□□□ -0.94
VIM-202ENST00000421459 CBX2Q14781 532 aaPredicted RBP9.2□□□□□ -0.94
VIM-202ENST00000421459 LONRF3Q496Y0 759 aa9.2□□□□□ -0.94
VIM-202ENST00000421459 PPP1R18Q6NYC8 613 aa9.2□□□□□ -0.94
VIM-202ENST00000421459 SYCE2Q6PIF2 218 aa9.2□□□□□ -0.94
VIM-202ENST00000421459 DHX32Q7L7V1 743 aaKnown RBP9.2□□□□□ -0.94
VIM-202ENST00000421459 RNF169Q8NCN4 708 aa9.2□□□□□ -0.94
VIM-202ENST00000421459 SUSD6Q92537 303 aa9.2□□□□□ -0.94
VIM-202ENST00000421459 TNPO1Q92973 898 aaKnown RBP9.2□□□□□ -0.94
VIM-202ENST00000421459 PPP2R3CQ969Q6 453 aa9.2□□□□□ -0.94
VIM-202ENST00000421459 ADAMTS10Q9H324 1103 aa9.2□□□□□ -0.94
VIM-202ENST00000421459 ATP6V0A4Q9HBG4 840 aa9.2□□□□□ -0.94
VIM-202ENST00000421459 GABBR1Q9UBS5 961 aa9.2□□□□□ -0.94
VIM-202ENST00000421459 MAFBQ9Y5Q3 323 aaPredicted RBP9.2□□□□□ -0.94
VIM-202ENST00000421459 KIAA1671Q9BY89 1806 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 MUC6Q6W4X9 2439 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 TMEM150BA6NC51 233 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 NT5C1B-RDH14C9J2C7 533 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 ZNF862O60290 1169 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 CYP3A4P08684 503 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 WEE2P0C1S8 567 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 SLC26A2P50443 739 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 AP3B2Q13367 1082 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 KCNC3Q14003 757 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 PKN1Q16512 942 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 UGCGQ16739 394 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 PFKFB3Q16875 520 aaPredicted RBP9.19□□□□□ -0.94
VIM-202ENST00000421459 PRR16Q569H4 304 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 EFCAB12Q6NXP0 572 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 ANKRD54Q6NXT1 300 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 KCNT2Q6UVM3 1135 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 NIPA1Q7RTP0 329 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 BMP8AQ7Z5Y6 402 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 MRPS27Q92552 414 aaKnown RBP9.19□□□□□ -0.94
VIM-202ENST00000421459 PHKBQ93100 1093 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 ASIC4Q96FT7 647 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 TCF25Q9BQ70 676 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 SH2D3AQ9BRG2 576 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 SMOC2Q9H3U7 446 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 ENTPD7Q9NQZ7 604 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 AAASQ9NRG9 546 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 C1orf112Q9NSG2 853 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 TMEM161AQ9NX61 479 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 AKT3Q9Y243 479 aa9.19□□□□□ -0.94
VIM-202ENST00000421459 CHMP2AO43633 222 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 COL1A2P08123 1366 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 METAP2P50579 478 aaKnown RBP eCLIP9.18□□□□□ -0.947e-12■■□□□ 14.1
VIM-202ENST00000421459 UBE3AQ05086 875 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 DRP2Q13474 957 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 CLLU1OSQ5K130 101 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 ZNF746Q6NUN9 644 aaPredicted RBP9.18□□□□□ -0.94
VIM-202ENST00000421459 Q6ZUG5 572 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 TMC7Q7Z402 723 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 ECHDC2Q86YB7 292 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 FBXL6Q8N531 539 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 LINC01465Q8N7H1 131 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 C12orf76Q8N812 135 aaPredicted RBP9.18□□□□□ -0.94
VIM-202ENST00000421459 HELQQ8TDG4 1101 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 AUTS2Q8WXX7 1259 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 BBXQ8WY36 941 aaPredicted RBP9.18□□□□□ -0.94
VIM-202ENST00000421459 LENG9Q96B70 501 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 TMEM117Q9H0C3 514 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 KCNH6Q9H252 994 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 PLXNA4Q9HCM2 1894 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 TSHZ2Q9NRE2 1034 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 SAMM50Q9Y512 469 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 PCDHA10Q9Y5I2 948 aa9.18□□□□□ -0.94
VIM-202ENST00000421459 hCG_1984214I3L0E3 225 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 MSH4O15457 936 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 PSAPP07602 524 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 ATF7P17544 494 aaPredicted RBP9.17□□□□□ -0.94
VIM-202ENST00000421459 LAG3P18627 525 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 CA8P35219 290 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 PLCB3Q01970 1234 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 SIGLEC14Q08ET2 396 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 RNF20Q5VTR2 975 aa9.17□□□□□ -0.94
VIM-202ENST00000421459 TMEM184AQ6ZMB5 413 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms