RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 NTRK3Q16288 839 aa16.79■□□□□ 0.28
RPS28-201ENST00000417088 FAM102BQ5T8I3 360 aa16.79■□□□□ 0.28
RPS28-201ENST00000417088 FBXL16Q8N461 479 aa16.79■□□□□ 0.28
RPS28-201ENST00000417088 LENG9Q96B70 501 aa16.79■□□□□ 0.28
RPS28-201ENST00000417088 AGXT2Q9BYV1 514 aa16.79■□□□□ 0.28
RPS28-201ENST00000417088 UPF3BQ9BZI7 483 aaKnown RBP16.79■□□□□ 0.28
RPS28-201ENST00000417088 CLEC1BQ9P126 229 aa16.79■□□□□ 0.28
RPS28-201ENST00000417088 PCDHGC5Q9Y5F6 944 aa16.79■□□□□ 0.28
RPS28-201ENST00000417088 C5orf42Q9H799 3197 aa16.79■□□□□ 0.28
RPS28-201ENST00000417088 EYA4O95677 639 aa16.78■□□□□ 0.28
RPS28-201ENST00000417088 RPS6KB1P23443 525 aa16.78■□□□□ 0.28
RPS28-201ENST00000417088 DSC3Q14574 896 aa16.78■□□□□ 0.28
RPS28-201ENST00000417088 SPOUT1Q5T280 376 aaKnown RBP16.78■□□□□ 0.28
RPS28-201ENST00000417088 RBM23Q86U06 439 aaKnown RBP16.78■□□□□ 0.28
RPS28-201ENST00000417088 METTL13Q8N6R0 699 aa16.78■□□□□ 0.28
RPS28-201ENST00000417088 POP1Q99575 1024 aaKnown RBP16.78■□□□□ 0.28
RPS28-201ENST00000417088 RNF26Q9BY78 433 aaPredicted RBP16.78■□□□□ 0.28
RPS28-201ENST00000417088 TYW1Q9NV66 732 aaKnown RBP16.78■□□□□ 0.28
RPS28-201ENST00000417088 RNF216Q9NWF9 866 aaPredicted RBP16.78■□□□□ 0.28
RPS28-201ENST00000417088 HCSTQ9UBK5 93 aa16.78■□□□□ 0.28
RPS28-201ENST00000417088 TCEAL9Q9UHQ7 104 aa16.78■□□□□ 0.28
RPS28-201ENST00000417088 PCDHB12Q9Y5F1 795 aa16.78■□□□□ 0.28
RPS28-201ENST00000417088 MAGEB2O15479 319 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 ZNF862O60290 1169 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 GLP2RO95838 553 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 FGFR1P11362 822 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 IFNAR1P17181 557 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 CLCN3P51790 818 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 AKAP17AQ02040 695 aaKnown RBP16.77■□□□□ 0.28
RPS28-201ENST00000417088 UBE3AQ05086 875 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 CSPP1Q1MSJ5 1256 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 LINC01465Q8N7H1 131 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 BICD2Q8TD16 824 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 FAM167AQ96KS9 214 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 SLC26A6Q9BXS9 759 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 ATP6V0A4Q9HBG4 840 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 AAASQ9NRG9 546 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 TMEM161AQ9NX61 479 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 VPS54Q9P1Q0 977 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 CEP131Q9UPN4 1083 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 SAMM50Q9Y512 469 aa16.77■□□□□ 0.28
RPS28-201ENST00000417088 MYH9P35579 1960 aaKnown RBP16.77■□□□□ 0.27
RPS28-201ENST00000417088 PIEZO1Q92508 2521 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 FNDC1Q4ZHG4 1894 aaPredicted RBP16.76■□□□□ 0.27
RPS28-201ENST00000417088 WDR64B1ANS9 1081 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 MSH4O15457 936 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 FGF18O76093 207 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 PDIA3P30101 505 aaKnown RBP16.76■□□□□ 0.27
RPS28-201ENST00000417088 EVCP57679 992 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 COASYQ13057 564 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 EFCAB12Q6NXP0 572 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 RNF135Q8IUD6 432 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 COLGALT1Q8NBJ5 622 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 SMRP1Q8NCR6 262 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 CCDC148Q8NFR7 591 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 MICAL1Q8TDZ2 1067 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 ADAMTS10Q9H324 1103 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 CWH43Q9H720 699 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 ELAC1Q9H777 363 aaKnown RBP16.76■□□□□ 0.27
RPS28-201ENST00000417088 TLE6Q9H808 572 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 DISC1Q9NRI5 854 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 PLXNA4Q9HCM2 1894 aa16.76■□□□□ 0.27
RPS28-201ENST00000417088 PER2O15055 1255 aa16.75■□□□□ 0.27
RPS28-201ENST00000417088 NLRP11P59045 1033 aaKnown RBP16.75■□□□□ 0.27
RPS28-201ENST00000417088 ERVFC1P60507 584 aa16.75■□□□□ 0.27
RPS28-201ENST00000417088 CCT2P78371 535 aaKnown RBP16.75■□□□□ 0.27
RPS28-201ENST00000417088 HERC4Q5GLZ8 1057 aaPredicted RBP16.75■□□□□ 0.27
RPS28-201ENST00000417088 THNSL1Q8IYQ7 743 aa16.75■□□□□ 0.27
RPS28-201ENST00000417088 LRRC71Q8N4P6 559 aa16.75■□□□□ 0.27
RPS28-201ENST00000417088 CCDC136Q96JN2 1154 aa16.75■□□□□ 0.27
RPS28-201ENST00000417088 MAP7D2Q96T17 732 aa16.75■□□□□ 0.27
RPS28-201ENST00000417088 RIT2Q99578 217 aa16.75■□□□□ 0.27
RPS28-201ENST00000417088 NCOA5Q9HCD5 579 aaKnown RBP16.75■□□□□ 0.27
RPS28-201ENST00000417088 TLR9Q9NR96 1032 aa16.75■□□□□ 0.27
RPS28-201ENST00000417088 NRBP2Q9NSY0 501 aa16.75■□□□□ 0.27
RPS28-201ENST00000417088 MUTYHQ9UIF7 546 aa16.75■□□□□ 0.27
RPS28-201ENST00000417088 BARX2Q9UMQ3 279 aaPredicted RBP16.75■□□□□ 0.27
RPS28-201ENST00000417088 AKT3Q9Y243 479 aa16.75■□□□□ 0.27
RPS28-201ENST00000417088 OATP04181 439 aa16.74■□□□□ 0.27
RPS28-201ENST00000417088 PSMA5P28066 241 aa16.74■□□□□ 0.27
RPS28-201ENST00000417088 TMOD1P28289 359 aa16.74■□□□□ 0.27
RPS28-201ENST00000417088 USP11P51784 963 aa16.74■□□□□ 0.27
RPS28-201ENST00000417088 PRKCEQ02156 737 aa16.74■□□□□ 0.27
RPS28-201ENST00000417088 UGCGQ16739 394 aa16.74■□□□□ 0.27
RPS28-201ENST00000417088 SLC5A5Q92911 643 aa16.74■□□□□ 0.27
RPS28-201ENST00000417088 ZNF668Q96K58 619 aaPredicted RBP16.74■□□□□ 0.27
RPS28-201ENST00000417088 TMEM117Q9H0C3 514 aa16.74■□□□□ 0.27
RPS28-201ENST00000417088 UNC45AQ9H3U1 944 aa16.74■□□□□ 0.27
RPS28-201ENST00000417088 SH3GLB2Q9NR46 395 aa16.74■□□□□ 0.27
RPS28-201ENST00000417088 RNF19AQ9NV58 838 aa16.74■□□□□ 0.27
RPS28-201ENST00000417088 USP15Q9Y4E8 981 aaPredicted RBP16.74■□□□□ 0.27
RPS28-201ENST00000417088 FSCN2O14926 492 aa16.73■□□□□ 0.27
RPS28-201ENST00000417088 GAS7O60861 476 aa16.73■□□□□ 0.27
RPS28-201ENST00000417088 LAG3P18627 525 aa16.73■□□□□ 0.27
RPS28-201ENST00000417088 EIF4BP23588 611 aaKnown RBP16.73■□□□□ 0.27
RPS28-201ENST00000417088 NLRP5P59047 1200 aa16.73■□□□□ 0.27
RPS28-201ENST00000417088 RBM10P98175 930 aaKnown RBP16.73■□□□□ 0.27
RPS28-201ENST00000417088 DUSP6Q16828 381 aa16.73■□□□□ 0.27
RPS28-201ENST00000417088 LRRC55Q6ZSA7 311 aa16.73■□□□□ 0.27
RPS28-201ENST00000417088 HFE2Q6ZVN8 426 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms