RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 CLIP3Q96DZ5 547 aa5.61□□□□□ -1.51
BRCA1-204ENST00000412061 FUBP3Q96I24 572 aaKnown RBP eCLIP5.61□□□□□ -1.51
BRCA1-204ENST00000412061 ELAC2Q9BQ52 826 aaKnown RBP5.61□□□□□ -1.51
BRCA1-204ENST00000412061 ZMAT4Q9H898 229 aa5.61□□□□□ -1.51
BRCA1-204ENST00000412061 VTA1Q9NP79 307 aa5.61□□□□□ -1.51
BRCA1-204ENST00000412061 DTLQ9NZJ0 730 aa5.61□□□□□ -1.51
BRCA1-204ENST00000412061 KLHL14Q9P2G3 628 aa5.61□□□□□ -1.51
BRCA1-204ENST00000412061 LZTS1Q9Y250 596 aa5.61□□□□□ -1.51
BRCA1-204ENST00000412061 ANKRD6Q9Y2G4 727 aa5.61□□□□□ -1.51
BRCA1-204ENST00000412061 ANO9A1A5B4 782 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 MT-CO1P00395 513 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 MYL3P08590 195 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 PPM1FP49593 454 aaPredicted RBP5.6□□□□□ -1.51
BRCA1-204ENST00000412061 YBX1P67809 324 aaKnown RBP5.6□□□□□ -1.51
BRCA1-204ENST00000412061 KLF1Q13351 362 aaPredicted RBP5.6□□□□□ -1.51
BRCA1-204ENST00000412061 GRM3Q14832 879 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 SAFBQ15424 915 aaKnown RBP eCLIP5.6□□□□□ -1.51
BRCA1-204ENST00000412061 MAPRE1Q15691 268 aaKnown RBP5.6□□□□□ -1.51
BRCA1-204ENST00000412061 KCNMB1Q16558 191 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 ARHGAP29Q52LW3 1261 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 CATSPEREQ5SY80 951 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 ESRP1Q6NXG1 681 aaKnown RBP5.6□□□□□ -1.51
BRCA1-204ENST00000412061 FRMD7Q6ZUT3 714 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 PCGF5Q86SE9 256 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 ZSWIM9Q86XI8 627 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 MIB1Q86YT6 1006 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 SMAP1Q8IYB5 467 aaPredicted RBP5.6□□□□□ -1.51
BRCA1-204ENST00000412061 ANKRD42Q8N9B4 389 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 ALG3Q92685 438 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 TOE1Q96GM8 510 aaKnown RBP5.6□□□□□ -1.51
BRCA1-204ENST00000412061 C16orf92Q96LL3 132 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 LRGUKQ96M69 825 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 ZDHHC5Q9C0B5 715 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 C14orf119Q9NWQ9 140 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 USP36Q9P275 1121 aaKnown RBP5.6□□□□□ -1.51
BRCA1-204ENST00000412061 PNMA8BQ9ULN7 279 aaPredicted RBP5.6□□□□□ -1.51
BRCA1-204ENST00000412061 RNF114Q9Y508 228 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 HCFC2Q9Y5Z7 792 aa5.6□□□□□ -1.51
BRCA1-204ENST00000412061 FRMPD2Q68DX3 1309 aaPredicted RBP5.59□□□□□ -1.51
BRCA1-204ENST00000412061 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.59□□□□□ -1.51
BRCA1-204ENST00000412061 MMEP08473 750 aa5.59□□□□□ -1.51
BRCA1-204ENST00000412061 PHKG2P15735 406 aa5.59□□□□□ -1.51
BRCA1-204ENST00000412061 CYP2C19P33261 490 aa5.59□□□□□ -1.51
BRCA1-204ENST00000412061 IARSP41252 1262 aaKnown RBP5.59□□□□□ -1.51
BRCA1-204ENST00000412061 GBX1Q14549 363 aa5.59□□□□□ -1.51
BRCA1-204ENST00000412061 AMIGO3Q86WK7 504 aa5.59□□□□□ -1.51
BRCA1-204ENST00000412061 CBARPQ8N350 705 aaPredicted RBP5.59□□□□□ -1.51
BRCA1-204ENST00000412061 CPA6Q8N4T0 437 aa5.59□□□□□ -1.51
BRCA1-204ENST00000412061 ASB15Q8WXK1 588 aa5.59□□□□□ -1.51
BRCA1-204ENST00000412061 GBP4Q96PP9 640 aa5.59□□□□□ -1.51
BRCA1-204ENST00000412061 ZHX3Q9H4I2 956 aa5.59□□□□□ -1.51
BRCA1-204ENST00000412061 TCF7L1Q9HCS4 588 aa5.59□□□□□ -1.51
BRCA1-204ENST00000412061 NGRNQ9NPE2 291 aaKnown RBP5.59□□□□□ -1.51
BRCA1-204ENST00000412061 ASB1Q9Y576 335 aa5.59□□□□□ -1.51
BRCA1-204ENST00000412061 PPP2R3BQ9Y5P8 575 aa5.59□□□□□ -1.51
BRCA1-204ENST00000412061 GOLGA8AA7E2F4 631 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 GOLGA8BA8MQT2 603 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 HRKO00198 91 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 KDM1AO60341 852 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 MAN1A1P33908 653 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 HALP42357 657 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 PCBP2Q15366 365 aaKnown RBP eCLIP5.58□□□□□ -1.52
BRCA1-204ENST00000412061 INAVAQ3KP66 663 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 ETV3LQ6ZN32 361 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 EPM2AIP1Q7L775 607 aaPredicted RBP5.58□□□□□ -1.52
BRCA1-204ENST00000412061 TMC6Q7Z403 805 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 CPXCR1Q8N123 301 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 HIPK4Q8NE63 616 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 RTF1Q92541 710 aaKnown RBP5.58□□□□□ -1.52
BRCA1-204ENST00000412061 DDX11Q96FC9 970 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 MS4A5Q9H3V2 200 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 BCAS3Q9H6U6 928 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 ANLNQ9NQW6 1124 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 MAN1C1Q9NR34 630 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 TOPORSQ9NS56 1045 aaPredicted RBP5.58□□□□□ -1.52
BRCA1-204ENST00000412061 HSPBP1Q9NZL4 362 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 LUZP4Q9P127 313 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 DDX20Q9UHI6 824 aaKnown RBP5.58□□□□□ -1.52
BRCA1-204ENST00000412061 SAP30BPQ9UHR5 308 aaKnown RBP5.58□□□□□ -1.52
BRCA1-204ENST00000412061 MSRAQ9UJ68 235 aa5.58□□□□□ -1.52
BRCA1-204ENST00000412061 UBA6A0AVT1 1052 aaPredicted RBP5.57□□□□□ -1.52
BRCA1-204ENST00000412061 CFBP00751 764 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 LRG1P02750 347 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 LPOP22079 712 aaPredicted RBP5.57□□□□□ -1.52
BRCA1-204ENST00000412061 AOAHP28039 575 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 RECQLP46063 649 aaPredicted RBP5.57□□□□□ -1.52
BRCA1-204ENST00000412061 SCAND1P57086 179 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 DBPQ10586 325 aaPredicted RBP5.57□□□□□ -1.52
BRCA1-204ENST00000412061 CHAF1AQ13111 956 aaPredicted RBP5.57□□□□□ -1.52
BRCA1-204ENST00000412061 GTF2H3Q13889 308 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 CCDC70Q6NSX1 233 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 C1orf228Q6PIY5 440 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 TEPPQ6URK8 271 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 TOGARAM2Q6ZUX3 1019 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 PNMA8AQ86V59 439 aaPredicted RBP5.57□□□□□ -1.52
BRCA1-204ENST00000412061 SKAP1Q86WV1 359 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 PHYKPLQ8IUZ5 450 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 C7orf31Q8N865 590 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 GPATCH11Q8N954 259 aa5.57□□□□□ -1.52
BRCA1-204ENST00000412061 PARD3BQ8TEW8 1205 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms