RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 PDS5AQ29RF7 1337 aaKnown RBP14.08□□□□□ -0.16
PTPRN-202ENST00000409251 SMIM24O75264 130 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 CHN1P15882 459 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 VPS41P49754 854 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 STRIP1Q5VSL9 837 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 PEX26Q7Z412 305 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 CPXCR1Q8N123 301 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 CUL5Q93034 780 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 ACTR5Q9H9F9 607 aaPredicted RBP14.08□□□□□ -0.16
PTPRN-202ENST00000409251 SNX24Q9Y343 169 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 PCDHA1Q9Y5I3 950 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 LRRC10BA6NIK2 292 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 PPP2R5BQ15173 497 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 NONOQ15233 471 aaKnown RBP eCLIP14.08□□□□□ -0.16
PTPRN-202ENST00000409251 EAPPQ56P03 285 aaPredicted RBP14.08□□□□□ -0.16
PTPRN-202ENST00000409251 DUSP9Q99956 384 aaKnown RBP14.08□□□□□ -0.16
PTPRN-202ENST00000409251 NEUROG2Q9H2A3 272 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 TAF1DQ9H5J8 278 aaPredicted RBP14.08□□□□□ -0.16
PTPRN-202ENST00000409251 JMJD4Q9H9V9 463 aa14.08□□□□□ -0.16
PTPRN-202ENST00000409251 CAND2O75155 1236 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 SHBGP04278 402 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 CCNE1P24864 410 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 ZNF844Q08AG5 666 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 TTI2Q6NXR4 508 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 AGAP11Q8TF27 550 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 FBXO28Q9NVF7 368 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 PI4KBQ9UBF8 816 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 A0A087X0T9 212 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 RGS16O15492 202 aaPredicted RBP14.07□□□□□ -0.16
PTPRN-202ENST00000409251 FAM228BP0C875 321 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 ACTN1P12814 892 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 TAF11Q15544 211 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 VWA3BQ502W6 1294 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 LRRC34Q8IZ02 419 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 ABCF3Q9NUQ8 709 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 DBR1Q9UK59 544 aaKnown RBP14.07□□□□□ -0.16
PTPRN-202ENST00000409251 F5H6K3 240 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 RGL2O15211 777 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 SLC37A4O43826 429 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 PPP1R11O60927 126 aaPredicted RBP14.07□□□□□ -0.16
PTPRN-202ENST00000409251 ELF3P78545 371 aaPredicted RBP14.07□□□□□ -0.16
PTPRN-202ENST00000409251 RNASELQ05823 741 aaKnown RBP14.07□□□□□ -0.16
PTPRN-202ENST00000409251 KLRC3Q07444 240 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 C15orf52Q6ZUT6 534 aaKnown RBP14.07□□□□□ -0.16
PTPRN-202ENST00000409251 ZNF507Q8TCN5 953 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 THAP9Q9H5L6 903 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 AZI2Q9H6S1 392 aa14.07□□□□□ -0.16
PTPRN-202ENST00000409251 RASSF10A6NK89 507 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 A6NNZ2 444 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 CFBP00751 764 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 CRYMQ14894 314 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 CDC37Q16543 378 aaPredicted RBP14.06□□□□□ -0.16
PTPRN-202ENST00000409251 TUBB8Q3ZCM7 444 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 CCDC50Q8IVM0 306 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 GLG1Q92896 1179 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 TNFRSF25Q93038 417 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 CHMP6Q96FZ7 201 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 CALML4Q96GE6 196 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 SNED1Q8TER0 1413 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 SORBS3O60504 671 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 ADCY7P51828 1080 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 POLE2P56282 527 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 LONP2Q86WA8 852 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 NIM1KQ8IY84 436 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 PSMD1Q99460 953 aa14.06□□□□□ -0.16
PTPRN-202ENST00000409251 A0A1W2PQC6 194 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 CHMP2AO43633 222 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 STAT3P40763 770 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 QRICH1Q2TAL8 776 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 NUGGCQ68CJ6 796 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 JDP2Q8WYK2 163 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 PSTPIP2Q9H939 334 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 TMBIM4Q9HC24 238 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 UTP11Q9Y3A2 253 aaKnown RBP14.05□□□□□ -0.16
PTPRN-202ENST00000409251 UBR3Q6ZT12 1888 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 A0A1W2PRG0 241 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 IGF2BP3O00425 579 aaKnown RBP eCLIP14.05□□□□□ -0.16
PTPRN-202ENST00000409251 FGFR4P22455 802 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 CAPN12Q6ZSI9 719 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 WHAMMQ8TF30 809 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 FAM163AQ96GL9 167 aaPredicted RBP14.05□□□□□ -0.16
PTPRN-202ENST00000409251 NUDT12Q9BQG2 462 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 PLAGL2Q9UPG8 496 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 FGGP02679 453 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 GNA11P29992 359 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 ZNF449Q6P9G9 518 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 NEK8Q86SG6 692 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 PIK3R5Q8WYR1 880 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 MTFR1LQ9H019 292 aa14.05□□□□□ -0.16
PTPRN-202ENST00000409251 BMP2KQ9NSY1 1161 aaPredicted RBP14.05□□□□□ -0.16
PTPRN-202ENST00000409251 MEIS1O00470 390 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 UBOX5O94941 541 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 IFI35P80217 286 aaPredicted RBP14.04□□□□□ -0.16
PTPRN-202ENST00000409251 MXRA7P84157 204 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 GABPAQ06546 454 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 ZNF543Q08ER8 600 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 PSMD2Q13200 908 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 ZDHHC15Q96MV8 337 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 MTA3Q9BTC8 594 aa14.04□□□□□ -0.16
PTPRN-202ENST00000409251 TRAPPC3O43617 180 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms