RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 LRRC71Q8N4P6 559 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 BPIFA3Q9BQP9 254 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 MED10Q9BTT4 135 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 WDR18Q9BV38 432 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 HAUS4Q9H6D7 363 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 FAM86B1E9PN63 330 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 FAM86B2P0C5J1 330 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 BPIFB4P59827 614 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 GNASQ5JWF2 1037 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 UBL4BQ8N7F7 174 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 MRPL4Q9BYD3 311 aaKnown RBP9.88□□□□□ -0.83
LIG4-202ENST00000405925 SUCLA2Q9P2R7 463 aaPredicted RBP9.88□□□□□ -0.83
LIG4-202ENST00000405925 RASAL2Q9UJF2 1139 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 STAM2O75886 525 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 TCF7P36402 384 aaPredicted RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 CYP27A1Q02318 531 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 IFRD2Q12894 506 aaPredicted RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 ZC2HC1CQ53FD0 456 aaPredicted RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 ZNF746Q6NUN9 644 aaPredicted RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 POLR3CQ9BUI4 534 aaPredicted RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 RANBP17Q9H2T7 1088 aaKnown RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 CGNQ9P2M7 1197 aaKnown RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 HPSEQ9Y251 543 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 ARFGEF2Q9Y6D5 1785 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 PKD1L3Q7Z443 1732 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 MYBP10242 640 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 ETF1P62495 437 aaKnown RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 SEMA3FQ13275 785 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 PPIL2Q13356 520 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 EMC2Q15006 297 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 SURF1Q15526 300 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 PCNX4Q63HM2 1172 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 DAAM2Q86T65 1068 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 DHX40Q8IX18 779 aaKnown RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 ZBTB9Q96C00 473 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 CCDC114Q96M63 670 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 DNAJC18Q9H819 358 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 BCCIPQ9P287 314 aaKnown RBP eCLIP9.87□□□□□ -0.83
LIG4-202ENST00000405925 LRFN2Q9ULH4 789 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 TACC3Q9Y6A5 838 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 BZW2Q9Y6E2 419 aaKnown RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 COL1A1P02452 1464 aaPredicted RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 COL18A1P39060 1754 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 MANSC4A6NHS7 340 aaPredicted RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 SOWAHDA6NJG2 315 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 CYP11B2P19099 503 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 MAATS1Q7Z4T9 603 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 KIAA1524Q8TCG1 905 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 MAK16Q9BXY0 300 aaKnown RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 GCOM2Q9BZD3 368 aaPredicted RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 NACA2Q9H009 215 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 KIAA1586Q9HCI6 787 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 ARFGAP3Q9NP61 516 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 TOPORSQ9NS56 1045 aaPredicted RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 ERAP1Q9NZ08 941 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 INPP5FQ9Y2H2 1132 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 PLCH1Q4KWH8 1693 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 CICQ96RK0 1608 aaPredicted RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 THAP12O43422 761 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 MAPK4P31152 587 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 EIF4A3P38919 411 aaKnown RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 FCGRTP55899 365 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 ZNF280AP59817 542 aaPredicted RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 TMEM62Q0P6H9 643 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 LAMC2Q13753 1193 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 IQCB1Q15051 598 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 PGM5Q15124 567 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 CATSPERGQ6ZRH7 1159 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 SAMD3Q8N6K7 520 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 MTMR14Q8NCE2 650 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 PROCA1Q8NCQ7 364 aaPredicted RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 ACRBPQ8NEB7 543 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 IFT81Q8WYA0 676 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 SPTLC3Q9NUV7 552 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 MKRN1Q9UHC7 482 aaKnown RBP9.87□□□□□ -0.83
LIG4-202ENST00000405925 ADAMTS1Q9UHI8 967 aa9.87□□□□□ -0.83
LIG4-202ENST00000405925 C5P01031 1676 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 ROBO3Q96MS0 1386 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 CRYBG1Q9Y4K1 1723 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 FZD9O00144 591 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 PDXKO00764 312 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 MFAP3LO75121 409 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 CTSHP09668 335 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 RGS2P41220 211 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 VAMP7P51809 220 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 OAZ1P54368 228 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 TNFAIP2Q03169 654 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 FUT2Q10981 343 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 PPP1R7Q15435 360 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 ZNF394Q53GI3 561 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 RINT1Q6NUQ1 792 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 KSR1Q8IVT5 923 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 SYCE1Q8N0S2 351 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 SYT2Q8N9I0 419 aaPredicted RBP9.86□□□□□ -0.83
LIG4-202ENST00000405925 TRIM58Q8NG06 486 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 AGO2Q9UKV8 859 aaKnown RBP9.86□□□□□ -0.83
LIG4-202ENST00000405925 RSPH10B2B2RC85 870 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 PRKCBP05771 671 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 RSPH10BP0C881 870 aa9.86□□□□□ -0.83
LIG4-202ENST00000405925 GBP2P32456 591 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms