RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ITGA4P13612 1032 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 HP1BP3Q5SSJ5 553 aaPredicted RBP12.91□□□□□ -0.34
HMGB1-206ENST00000405805 STXBP4Q6ZWJ1 553 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 RABGAP1Q9Y3P9 1069 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 MEFVO15553 781 aaPredicted RBP12.91□□□□□ -0.34
HMGB1-206ENST00000405805 CHRM1P11229 460 aaPredicted RBP12.91□□□□□ -0.34
HMGB1-206ENST00000405805 ATP2B4P23634 1241 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 UAP1Q16222 522 aaPredicted RBP12.91□□□□□ -0.34
HMGB1-206ENST00000405805 PDCD2Q16342 344 aaPredicted RBP12.91□□□□□ -0.34
HMGB1-206ENST00000405805 KLHDC7AQ5VTJ3 777 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 HHATQ5VTY9 493 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 HOOK3Q86VS8 718 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 HOOK2Q96ED9 719 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 ZMAT2Q96NC0 199 aaKnown RBP12.91□□□□□ -0.34
HMGB1-206ENST00000405805 PVALEFA0A1B0GWK0 134 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 DESP17661 470 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 MDH1P40925 334 aaKnown RBP12.9□□□□□ -0.34
HMGB1-206ENST00000405805 SLC18A3Q16572 532 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 MMGT1Q8N4V1 131 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 MTUS1Q9ULD2 1270 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 TTLL1O95922 423 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 NMT1P30419 496 aaKnown RBP12.9□□□□□ -0.34
HMGB1-206ENST00000405805 NPY5RQ15761 445 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 TTMPQ5BVD1 217 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 SNRNP27Q8WVK2 155 aaKnown RBP12.9□□□□□ -0.34
HMGB1-206ENST00000405805 HAUS2Q9NVX0 235 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 PNMA2Q9UL42 364 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 GMNCA6NCL1 334 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 RSPH10B2B2RC85 870 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 GAS7O60861 476 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 LUC7L3O95232 432 aaKnown RBP12.9□□□□□ -0.34
HMGB1-206ENST00000405805 RSPH10BP0C881 870 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 ZBTB16Q05516 673 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 PRR5LQ6MZQ0 368 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 SYCE1Q8N0S2 351 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 RAB3IL1Q8TBN0 382 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 RAB17Q9H0T7 212 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 TMOD2Q9NZR1 351 aa12.9□□□□□ -0.34
HMGB1-206ENST00000405805 H0Y3Z8 333 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 OPHN1O60890 802 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 DLATP10515 647 aaKnown RBP12.89□□□□□ -0.35
HMGB1-206ENST00000405805 MTMR3Q13615 1198 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 CRYMQ14894 314 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 CYP4F22Q6NT55 531 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 INTS8Q75QN2 995 aaKnown RBP12.89□□□□□ -0.35
HMGB1-206ENST00000405805 DPH6Q7L8W6 267 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 ELMO3Q96BJ8 720 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 IQCDQ96DY2 449 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 ANO3Q9BYT9 981 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 ZMYND12Q9H0C1 365 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 UBE2TQ9NPD8 197 aaPredicted RBP12.89□□□□□ -0.35
HMGB1-206ENST00000405805 A6NNZ2 444 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 HMGB1P1B2RPK0 211 aaPredicted RBP12.89□□□□□ -0.35
HMGB1-206ENST00000405805 DIAPH2O60879 1101 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 APBA3O96018 575 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 IFNB1P01574 187 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 MYBP10242 640 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 TPP2P29144 1249 aaPredicted RBP12.89□□□□□ -0.35
HMGB1-206ENST00000405805 CASP4P49662 377 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 DR1Q01658 176 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 TUBB8Q3ZCM7 444 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 ZC2HC1CQ53FD0 456 aaPredicted RBP12.89□□□□□ -0.35
HMGB1-206ENST00000405805 UBL4BQ8N7F7 174 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 ANKS1AQ92625 1134 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 STMN2Q93045 179 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 DNAJC12Q9UKB3 198 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 C5P01031 1676 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 KDM3AQ9Y4C1 1321 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 UCHL3P15374 230 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 KCNJ1P48048 391 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 MAP7Q14244 749 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 CERKLQ49MI3 558 aaPredicted RBP12.89□□□□□ -0.35
HMGB1-206ENST00000405805 MIIPQ5JXC2 388 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 SPATA24Q86W54 205 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 SPATS2Q86XZ4 545 aaKnown RBP12.89□□□□□ -0.35
HMGB1-206ENST00000405805 PARD3BQ8TEW8 1205 aa12.89□□□□□ -0.35
HMGB1-206ENST00000405805 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.89□□□□□ -0.35
HMGB1-206ENST00000405805 MMEP08473 750 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 MYCLP12524 364 aaPredicted RBP12.88□□□□□ -0.35
HMGB1-206ENST00000405805 SSTR3P32745 418 aaPredicted RBP12.88□□□□□ -0.35
HMGB1-206ENST00000405805 ICA1Q05084 483 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 RBM26Q5T8P6 1007 aaKnown RBP12.88□□□□□ -0.35
HMGB1-206ENST00000405805 CENPPQ6IPU0 288 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 FBXO11Q86XK2 927 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 B4GALNT2Q8NHY0 566 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 NOP53Q9NZM5 478 aaKnown RBP12.88□□□□□ -0.35
HMGB1-206ENST00000405805 KCPQ6ZWJ8 1503 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 NR3C1P04150 777 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 FGFR4P22455 802 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 HSD17B3P37058 310 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 BIRC3Q13489 604 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 TNIP1Q15025 636 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 BARGINQ6ZT62 677 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 METTL13Q8N6R0 699 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 CCDC197Q8NCU1 140 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 NEDD1Q8NHV4 660 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 TNFRSF25Q93038 417 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 FAM118BQ9BPY3 351 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 EPN3Q9H201 632 aa12.88□□□□□ -0.35
HMGB1-206ENST00000405805 PNMA6FA0A0J9YX94 578 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms