RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 EMC2Q15006 297 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 GRIK4Q16099 956 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 NBPF20Q3BBV1 942 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 ZSCAN23Q3MJ62 389 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 FAM47CQ5HY64 1035 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 FAM102BQ5T8I3 360 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 CCDC65Q8IXS2 484 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 MCPH1Q8NEM0 835 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 U2AF1L4Q8WU68 220 aaKnown RBP20.05■□□□□ 0.8
SDC1-203ENST00000403076 DNAJC19Q96DA6 116 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 GLT1D1Q96MS3 346 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 JPH2Q9BR39 696 aaPredicted RBP20.05■□□□□ 0.8
SDC1-203ENST00000403076 TMEM106CQ9BVX2 250 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 SETD4Q9NVD3 440 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 PANK4Q9NVE7 773 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 COL1A2P08123 1366 aa20.05■□□□□ 0.8
SDC1-203ENST00000403076 SYCE3A1L190 88 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 BIN1O00499 593 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 HIP1RO75146 1068 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 MAFO75444 373 aaPredicted RBP20.04■□□□□ 0.8
SDC1-203ENST00000403076 SGPL1O95470 568 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 GUCY2CP25092 1073 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 CNNM4Q6P4Q7 775 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 SASS6Q6UVJ0 657 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 NRCAMQ92823 1304 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 GSDMAQ96QA5 445 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 TIPINQ9BVW5 301 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 SUGCTQ9HAC7 445 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 EXOC1Q9NV70 894 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 RMND1Q9NWS8 449 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 OGDHLQ9ULD0 1010 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 ODF2LQ9ULJ1 636 aa20.04■□□□□ 0.8
SDC1-203ENST00000403076 PVALEFA0A1B0GWK0 134 aa20.03■□□□□ 0.8
SDC1-203ENST00000403076 ZBTB42B2RXF5 422 aa20.03■□□□□ 0.8
SDC1-203ENST00000403076 DNM1LO00429 736 aa20.03■□□□□ 0.8
SDC1-203ENST00000403076 MAGEB2O15479 319 aa20.03■□□□□ 0.8
SDC1-203ENST00000403076 ISM2Q6H9L7 571 aa20.03■□□□□ 0.8
SDC1-203ENST00000403076 RBM43Q6ZSC3 357 aaKnown RBP20.03■□□□□ 0.8
SDC1-203ENST00000403076 UNC13DQ70J99 1090 aa20.03■□□□□ 0.8
SDC1-203ENST00000403076 METTL13Q8N6R0 699 aa20.03■□□□□ 0.8
SDC1-203ENST00000403076 RETREG2Q8NC44 543 aa20.03■□□□□ 0.8
SDC1-203ENST00000403076 CEP89Q96ST8 783 aa20.03■□□□□ 0.8
SDC1-203ENST00000403076 ANP32EQ9BTT0 268 aa20.03■□□□□ 0.8
SDC1-203ENST00000403076 DHX33Q9H6R0 707 aaKnown RBP20.03■□□□□ 0.8
SDC1-203ENST00000403076 HDAC6Q9UBN7 1215 aa20.03■□□□□ 0.8
SDC1-203ENST00000403076 COL4A3BPQ9Y5P4 624 aa20.03■□□□□ 0.8
SDC1-203ENST00000403076 C17orf102A2RUQ5 167 aa20.02■□□□□ 0.8
SDC1-203ENST00000403076 SFI1A8K8P3 1242 aa20.02■□□□□ 0.8
SDC1-203ENST00000403076 RSPH10B2B2RC85 870 aa20.02■□□□□ 0.8
SDC1-203ENST00000403076 RSPH10BP0C881 870 aa20.02■□□□□ 0.8
SDC1-203ENST00000403076 GNAT1P11488 350 aa20.02■□□□□ 0.8
SDC1-203ENST00000403076 KLRC1P26715 233 aa20.02■□□□□ 0.8
SDC1-203ENST00000403076 KMT5BQ4FZB7 885 aa20.02■□□□□ 0.8
SDC1-203ENST00000403076 HERC4Q5GLZ8 1057 aaPredicted RBP20.02■□□□□ 0.8
SDC1-203ENST00000403076 MYCT1Q8N699 235 aa20.02■□□□□ 0.8
SDC1-203ENST00000403076 DRC1Q96MC2 740 aa20.02■□□□□ 0.8
SDC1-203ENST00000403076 XPNPEP1Q9NQW7 623 aa20.02■□□□□ 0.8
SDC1-203ENST00000403076 TUBE1Q9UJT0 475 aa20.02■□□□□ 0.8
SDC1-203ENST00000403076 PHF24Q9UPV7 400 aa20.02■□□□□ 0.8
SDC1-203ENST00000403076 KLRC4O43908 158 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 GAP43P17677 238 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 SARSP49591 514 aaKnown RBP20.02■□□□□ 0.79
SDC1-203ENST00000403076 DNM2P50570 870 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 SOX10P56693 466 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 EFCAB12Q6NXP0 572 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 MTHFD1LQ6UB35 978 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 LMBR1Q8WVP7 490 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 KIFAP3Q92845 792 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 TMEM143Q96AN5 459 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 PARVGQ9HBI0 331 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 GPRC5CQ9NQ84 441 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 STARD7Q9NQZ5 370 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 PDLIM7Q9NR12 457 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 MAN1B1Q9UKM7 699 aa20.02■□□□□ 0.79
SDC1-203ENST00000403076 KAT6AQ92794 2004 aa20.01■□□□□ 0.79
SDC1-203ENST00000403076 A0A1W2PQ45 241 aaPredicted RBP20.01■□□□□ 0.79
SDC1-203ENST00000403076 A0A1W2PQY0 241 aa20.01■□□□□ 0.79
SDC1-203ENST00000403076 GAS2O43903 313 aaKnown RBP20.01■□□□□ 0.79
SDC1-203ENST00000403076 C22orf31O95567 290 aa20.01■□□□□ 0.79
SDC1-203ENST00000403076 COASYQ13057 564 aa20.01■□□□□ 0.79
SDC1-203ENST00000403076 ITGA7Q13683 1181 aa20.01■□□□□ 0.79
SDC1-203ENST00000403076 KCNB1Q14721 858 aa20.01■□□□□ 0.79
SDC1-203ENST00000403076 NT5DC1Q5TFE4 455 aa20.01■□□□□ 0.79
SDC1-203ENST00000403076 LRRC71Q8N4P6 559 aa20.01■□□□□ 0.79
SDC1-203ENST00000403076 SPATA20Q8TB22 786 aa20.01■□□□□ 0.79
SDC1-203ENST00000403076 TCP11Q8WWU5 503 aa20.01■□□□□ 0.79
SDC1-203ENST00000403076 CRISPLD2Q9H0B8 497 aa20.01■□□□□ 0.79
SDC1-203ENST00000403076 POLR3FQ9H1D9 316 aaPredicted RBP20.01■□□□□ 0.79
SDC1-203ENST00000403076 FRMPD3Q5JV73 1810 aa20.01■□□□□ 0.79
SDC1-203ENST00000403076 ARID2Q68CP9 1835 aa20■□□□□ 0.79
SDC1-203ENST00000403076 TMOD1P28289 359 aa20■□□□□ 0.79
SDC1-203ENST00000403076 MAPK7Q13164 816 aa20■□□□□ 0.79
SDC1-203ENST00000403076 IER5Q5VY09 327 aa20■□□□□ 0.79
SDC1-203ENST00000403076 NFRKBQ6P4R8 1299 aa20■□□□□ 0.79
SDC1-203ENST00000403076 SFR1Q86XK3 245 aa20■□□□□ 0.79
SDC1-203ENST00000403076 ZBTB10Q96DT7 871 aa20■□□□□ 0.79
SDC1-203ENST00000403076 IFT74Q96LB3 600 aa20■□□□□ 0.79
SDC1-203ENST00000403076 TBC1D7Q9P0N9 293 aa20■□□□□ 0.79
SDC1-203ENST00000403076 LARSQ9P2J5 1176 aaKnown RBP20■□□□□ 0.79
SDC1-203ENST00000403076 IGKV6-21A0A0C4DH24 114 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms