RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 GMNCA6NCL1 334 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 EEF1GP26641 437 aaKnown RBP6.16□□□□□ -1.42
RFFL-202ENST00000394597 CASP1P29466 404 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 STAT3P40763 770 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 ECE1P42892 770 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 KIAA0753Q2KHM9 967 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 VWA3BQ502W6 1294 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 UNC13DQ70J99 1090 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 DAAM2Q86T65 1068 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 SPATA24Q86W54 205 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 B4GALNT2Q8NHY0 566 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 NSUN6Q8TEA1 469 aaKnown RBP6.16□□□□□ -1.42
RFFL-202ENST00000394597 LMBR1Q8WVP7 490 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 RAB3IPQ96QF0 476 aaPredicted RBP6.16□□□□□ -1.42
RFFL-202ENST00000394597 PANX2Q96RD6 677 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 PAPOLBQ9NRJ5 636 aaKnown RBP6.16□□□□□ -1.42
RFFL-202ENST00000394597 TBC1D22BQ9NU19 505 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 PVALEFA0A1B0GWK0 134 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 COBLO75128 1261 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 ITGB4P16144 1822 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 LSP1P33241 339 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 PRELPP51888 382 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 SEC24CP53992 1094 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 CTTNQ14247 550 aaKnown RBP6.16□□□□□ -1.42
RFFL-202ENST00000394597 LRRC41Q15345 812 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 ODR4Q5SWX8 454 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 FAM160B1Q5W0V3 765 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 HOOK3Q86VS8 718 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 METTL16Q86W50 562 aaKnown RBP6.16□□□□□ -1.42
RFFL-202ENST00000394597 PARD3BQ8TEW8 1205 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 RAD54LQ92698 747 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 FNBP1Q96RU3 617 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 ATP6V0A4Q9HBG4 840 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 METTL14Q9HCE5 456 aaKnown RBP6.16□□□□□ -1.42
RFFL-202ENST00000394597 EPB41L5Q9HCM4 733 aa6.16□□□□□ -1.42
RFFL-202ENST00000394597 SAMSN1Q9NSI8 373 aaKnown RBP6.16□□□□□ -1.42
RFFL-202ENST00000394597 ARMCX3Q9UH62 379 aaPredicted RBP6.16□□□□□ -1.42
RFFL-202ENST00000394597 SPEF2Q9C093 1822 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 CRYBG1Q9Y4K1 1723 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 hCG_2014768A0A024R1R8 64 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 A0A1W2PRG0 241 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 HMGB1P1B2RPK0 211 aaPredicted RBP6.15□□□□□ -1.42
RFFL-202ENST00000394597 H0YCG3 227 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 FOXN1O15353 648 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 SORBS3O60504 671 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 TCP1P17987 556 aaKnown RBP6.15□□□□□ -1.42
RFFL-202ENST00000394597 ALDH3A1P30838 453 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 IFNAR2P48551 515 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 PAPOLAP51003 745 aaKnown RBP6.15□□□□□ -1.42
RFFL-202ENST00000394597 FKBP3Q00688 224 aaKnown RBP6.15□□□□□ -1.42
RFFL-202ENST00000394597 EVX2Q03828 476 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 MTMR1Q13613 665 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 CEP55Q53EZ4 464 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 HHATQ5VTY9 493 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 NAA35Q5VZE5 725 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 MIS18BP1Q6P0N0 1132 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 USP49Q70CQ1 688 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 CDAN1Q8IWY9 1227 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 ELOA2Q8IYF1 753 aaPredicted RBP6.15□□□□□ -1.42
RFFL-202ENST00000394597 SCYL3Q8IZE3 742 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 ZNF384Q8TF68 577 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 DDX12PQ92771 950 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 MKL1Q969V6 931 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 OTUD5Q96G74 571 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 TUBGCP2Q9BSJ2 902 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 IMPG2Q9BZV3 1241 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 BHMT2Q9H2M3 363 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 ADARB2Q9NS39 739 aaKnown RBP6.15□□□□□ -1.42
RFFL-202ENST00000394597 EMILIN3Q9NT22 766 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 HYOU1Q9Y4L1 999 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 TBX3O15119 743 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 CEP104O60308 925 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 MYBL2P10244 700 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 GNAT1P11488 350 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 CCNHP51946 323 aaPredicted RBP6.15□□□□□ -1.42
RFFL-202ENST00000394597 CACNB1Q02641 598 aaPredicted RBP6.15□□□□□ -1.42
RFFL-202ENST00000394597 MTMR3Q13615 1198 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 RAPGEF1Q13905 1077 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 STXBP2Q15833 593 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 NBPF12Q5TAG4 269 aaPredicted RBP6.15□□□□□ -1.42
RFFL-202ENST00000394597 C9orf131Q5VYM1 1079 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 TRIM65Q6PJ69 517 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 FASTKD5Q7L8L6 764 aaKnown RBP6.15□□□□□ -1.42
RFFL-202ENST00000394597 DPP9Q86TI2 863 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 MSANTD4Q8NCY6 345 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 SLC17A8Q8NDX2 589 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 TRIM31Q9BZY9 425 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 TMEM60Q9H2L4 133 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 ACAD9Q9H845 621 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 NOD2Q9HC29 1040 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 PCDHAC2Q9Y5I4 1007 aa6.15□□□□□ -1.42
RFFL-202ENST00000394597 NUP98P52948 1817 aa6.15□□□□□ -1.43
RFFL-202ENST00000394597 E9PMD0 336 aa6.15□□□□□ -1.43
RFFL-202ENST00000394597 K7ENM7 598 aa6.15□□□□□ -1.43
RFFL-202ENST00000394597 HEXIM1O94992 359 aaKnown RBP6.15□□□□□ -1.43
RFFL-202ENST00000394597 PSAPP07602 524 aa6.15□□□□□ -1.43
RFFL-202ENST00000394597 XRCC5P13010 732 aaKnown RBP6.15□□□□□ -1.43
RFFL-202ENST00000394597 ZBTB16Q05516 673 aa6.15□□□□□ -1.43
RFFL-202ENST00000394597 ACBD5Q5T8D3 534 aaPredicted RBP6.15□□□□□ -1.43
RFFL-202ENST00000394597 DEPTORQ8TB45 409 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms