RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 SPIRE2Q8WWL2 714 aa9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 CLEC4DQ8WXI8 215 aa9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 KIFAP3Q92845 792 aa9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 CCDC43Q96MW1 224 aaKnown RBP9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 NOX5Q96PH1 765 aa9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 STRA6Q9BX79 667 aa9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 IFIH1Q9BYX4 1025 aaKnown RBP9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 KIAA1586Q9HCI6 787 aa9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 AGO4Q9HCK5 861 aaKnown RBP9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 ARFGAP3Q9NP61 516 aa9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 DMAC2Q9NW81 257 aa9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 DDX41Q9UJV9 622 aaKnown RBP9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 PFASO15067 1338 aa9.56□□□□□ -0.88
SNRNP40-202ENST00000373720 A0A0A6YYK5 440 aaPredicted RBP9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 VWA5AO00534 786 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 GCNT3O95395 438 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 NR3C1P04150 777 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 TGFB3P10600 412 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 KRT13P13646 458 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 VCAM1P19320 739 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 GTF2H1P32780 548 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 MAGEA1P43355 309 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 GMPSP49915 693 aaPredicted RBP9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 KIF11P52732 1056 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 NPEPPSP55786 919 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 SLC18A3Q16572 532 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 ASTE1Q2TB18 679 aaPredicted RBP9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 CCDC174Q6PII3 467 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 LBX2Q6XYB7 198 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 MIGA2Q7L4E1 593 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 RRAGAQ7L523 313 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 TRAPPC11Q7Z392 1133 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 SFR1Q86XK3 245 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 MSANTD4Q8NCY6 345 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 MCPH1Q8NEM0 835 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 SYTL5Q8TDW5 730 aaPredicted RBP9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 GTF3C2Q8WUA4 911 aaPredicted RBP9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 BAP1Q92560 729 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 TBC1D5Q92609 795 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 ACCSQ96QU6 501 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 WDR24Q96S15 920 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 CHP1Q99653 195 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 LXNQ9BS40 222 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 TEX13BQ9BXU2 312 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 AGPAT5Q9NUQ2 364 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 HACL1Q9UJ83 578 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 RAB21Q9UL25 225 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 DIS3Q9Y2L1 958 aaKnown RBP9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 PCDHA13Q9Y5I0 950 aa9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 ZC3H4Q9UPT8 1303 aaKnown RBP9.55□□□□□ -0.88
SNRNP40-202ENST00000373720 RASSF10A6NK89 507 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 DHX15O43143 795 aaKnown RBP9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 EIF3JO75822 258 aaKnown RBP9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 PLS3P13797 630 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 ITGB5P18084 799 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 PTPRAP18433 802 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 LMNB1P20700 586 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 INPP5BP32019 993 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 STAT1P42224 750 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 PAFAH1B1P43034 410 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 LSM11P83369 360 aaKnown RBP eCLIP9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 GTF2BQ00403 316 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 PGM5Q15124 567 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 PPP2R5EQ16537 467 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 ODR4Q5SWX8 454 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 ARHGEF16Q5VV41 709 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 CATSPERGQ6ZRH7 1159 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 SYCE1Q8N0S2 351 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 KRT222Q8N1A0 295 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 EIF1ADQ8N9N8 165 aaKnown RBP9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 ZC3H15Q8WU90 426 aaKnown RBP9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 DYDC2Q96IM9 177 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 INPP4AQ96PE3 977 aaPredicted RBP9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 TRERF1Q96PN7 1200 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 SPAG5Q96R06 1193 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 RMDN3Q96TC7 470 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 P2RX7Q99572 595 aaKnown RBP9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 PDCD2LQ9BRP1 358 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 DESI2Q9BSY9 194 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 CARD6Q9BX69 1037 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 ACAD9Q9H845 621 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 PXMP2Q9NR77 195 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 FAM207AQ9NSI2 230 aaPredicted RBP9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 GPRC5DQ9NZD1 345 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 PCDHA10Q9Y5I2 948 aa9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 V9GYY5 206 aaPredicted RBP9.54□□□□□ -0.88
SNRNP40-202ENST00000373720 COL4A5P29400 1685 aa9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 GRID2IPA4D2P6 1211 aa9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 LRRC53A6NM62 1247 aa9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 EML1O00423 815 aa9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 GAS2O43903 313 aaKnown RBP9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 PPP1R37O75864 691 aa9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 DGAT1O75907 488 aa9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 PSAPP07602 524 aa9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 ALAS1P13196 640 aa9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 ICAM3P32942 547 aa9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 STAT3P40763 770 aa9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 RPS6P62753 249 aaKnown RBP9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 RBM10P98175 930 aaKnown RBP9.53□□□□□ -0.88
SNRNP40-202ENST00000373720 AMPD2Q01433 879 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms