RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 SPICE1Q8N0Z3 855 aa12.68□□□□□ -0.38
USF1-201ENST00000368019 EIF1ADQ8N9N8 165 aaKnown RBP12.68□□□□□ -0.38
USF1-201ENST00000368019 MAML3Q96JK9 1138 aa12.68□□□□□ -0.38
USF1-201ENST00000368019 TRERF1Q96PN7 1200 aa12.68□□□□□ -0.38
USF1-201ENST00000368019 SH2D4AQ9H788 454 aa12.68□□□□□ -0.38
USF1-201ENST00000368019 NHEJ1Q9H9Q4 299 aaPredicted RBP12.68□□□□□ -0.38
USF1-201ENST00000368019 PLAGL2Q9UPG8 496 aa12.68□□□□□ -0.38
USF1-201ENST00000368019 ROBO3Q96MS0 1386 aa12.68□□□□□ -0.38
USF1-201ENST00000368019 ATP8B3O60423 1300 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 MYH4Q9Y623 1939 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 SSU72P8A0A1W2PR75 194 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 GOLGA6CA6NDK9 693 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 GOLGA6BA6NDN3 693 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 GOLGA6DP0CG33 693 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 EEF2P13639 858 aaKnown RBP12.67□□□□□ -0.38
USF1-201ENST00000368019 IDEP14735 1019 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 TRIM21P19474 475 aaKnown RBP12.67□□□□□ -0.38
USF1-201ENST00000368019 MCM7P33993 719 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 TBC1D8BQ0IIM8 1120 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 MAPK8IP2Q13387 824 aaPredicted RBP12.67□□□□□ -0.38
USF1-201ENST00000368019 GRM4Q14833 912 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 PRAMEF19Q5SWL8 479 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 CNNM4Q6P4Q7 775 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 NCAPG2Q86XI2 1143 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 MREGQ8N565 214 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 RNF10Q8N5U6 811 aaKnown RBP12.67□□□□□ -0.38
USF1-201ENST00000368019 CAGE1Q8TC20 777 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 ALS2CR12Q96Q35 445 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 DUSP9Q99956 384 aaKnown RBP12.67□□□□□ -0.38
USF1-201ENST00000368019 NUCKS1Q9H1E3 243 aaKnown RBP12.67□□□□□ -0.38
USF1-201ENST00000368019 KANSL2Q9H9L4 492 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 SLC5A4Q9NY91 659 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 GOLGA6AQ9NYA3 693 aa12.67□□□□□ -0.38
USF1-201ENST00000368019 CCDC194A0A1B0GVG4 234 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 EBAG9O00559 213 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 SLC25A27O95847 323 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 FCER1AP12319 257 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 SMARCA1P28370 1054 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 GGCXP38435 758 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 USP8P40818 1118 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 UBA7P41226 1012 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 PLS1Q14651 629 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 LRRC41Q15345 812 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 SWT1Q5T5J6 900 aaKnown RBP12.66□□□□□ -0.38
USF1-201ENST00000368019 C1orf53Q5VUE5 145 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 RIOX2Q8IUF8 465 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 CREG2Q8IUH2 290 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 CD302Q8IX05 232 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 CSGALNACT2Q8N6G5 542 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 REPS2Q8NFH8 660 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 CNOT6LQ96LI5 555 aaKnown RBP12.66□□□□□ -0.38
USF1-201ENST00000368019 LBHD1Q9BQE6 289 aaPredicted RBP12.66□□□□□ -0.38
USF1-201ENST00000368019 TCP11L1Q9NUJ3 509 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 FBXO28Q9NVF7 368 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 STK17AQ9UEE5 414 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 GGA2Q9UJY4 613 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 PRUNE2Q8WUY3 3088 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 EYSQ5T1H1 3165 aa12.66□□□□□ -0.38
USF1-201ENST00000368019 MCM3APO60318 1980 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 PVALEFA0A1B0GWK0 134 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 GRID2IPA4D2P6 1211 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 TRIM49BA6NDI0 452 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 KBTBD13C9JR72 458 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 VWA5AO00534 786 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 EIF3HO15372 352 aaKnown RBP eCLIP12.65□□□□□ -0.38
USF1-201ENST00000368019 PAFAH1B1P43034 410 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 IRAK1P51617 712 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 ZNF792Q3KQV3 632 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 MMS22LQ6ZRQ5 1243 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 B4GALNT4Q76KP1 1039 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 KRT25Q7Z3Z0 450 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 SYN2Q92777 582 aaPredicted RBP12.65□□□□□ -0.38
USF1-201ENST00000368019 STAMQ92783 540 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 CCDC42Q96M95 316 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 GUCD1Q96NT3 240 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 TRIM9Q9C026 710 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 LRRC27Q9C0I9 530 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 LACRTQ9GZZ8 138 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 LUC7LQ9NQ29 371 aaKnown RBP12.65□□□□□ -0.38
USF1-201ENST00000368019 TRIM10Q9UDY6 481 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 ZNF214Q9UL59 606 aaPredicted RBP12.65□□□□□ -0.38
USF1-201ENST00000368019 PPP1R9AQ9ULJ8 1098 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 ATP11BQ9Y2G3 1177 aa12.65□□□□□ -0.38
USF1-201ENST00000368019 DIS3Q9Y2L1 958 aaKnown RBP12.65□□□□□ -0.38
USF1-201ENST00000368019 B4DLN1 442 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 RBAK-RBAKDNI3L0D1 243 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 hCG_1984214I3L0E3 225 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 PDE2AO00408 941 aaPredicted RBP12.64□□□□□ -0.39
USF1-201ENST00000368019 CES2O00748 559 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 SLC26A4O43511 780 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 GUCY2CP25092 1073 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 STAT3P40763 770 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 ADCYAP1R1P41586 468 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 PMS1P54277 932 aaKnown RBP12.64□□□□□ -0.39
USF1-201ENST00000368019 LRRC63Q05C16 580 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 MAN2A1Q16706 1144 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 TRIM60Q495X7 471 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 FAM47AQ5JRC9 791 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 MIIPQ5JXC2 388 aa12.64□□□□□ -0.39
USF1-201ENST00000368019 CENPPQ6IPU0 288 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms