RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 ASPRV1Q53RT3 343 aa9.26□□□□□ -0.93
SYNE1-206ENST00000367253 SLC10A5Q5PT55 438 aa9.26□□□□□ -0.93
SYNE1-206ENST00000367253 LUZP2Q86TE4 346 aa9.26□□□□□ -0.93
SYNE1-206ENST00000367253 PDZD8Q8NEN9 1154 aa9.26□□□□□ -0.93
SYNE1-206ENST00000367253 RSPH9Q9H1X1 276 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-206ENST00000367253 BCRP11274 1271 aa9.26□□□□□ -0.93
SYNE1-206ENST00000367253 RNF207Q6ZRF8 634 aa9.26□□□□□ -0.93
SYNE1-206ENST00000367253 PPLO60437 1756 aa9.26□□□□□ -0.93
SYNE1-206ENST00000367253 IQGAP1P46940 1657 aa9.26□□□□□ -0.93
SYNE1-206ENST00000367253 SPTLC2O15270 562 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 HADHQ16836 314 aaKnown RBP9.25□□□□□ -0.93
SYNE1-206ENST00000367253 RBM20Q5T481 1227 aaKnown RBP9.25□□□□□ -0.93
SYNE1-206ENST00000367253 NEK5Q6P3R8 708 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 C12orf50Q8NA57 414 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-206ENST00000367253 C1orf131Q8NDD1 294 aaKnown RBP9.25□□□□□ -0.93
SYNE1-206ENST00000367253 FOPNLQ96NB1 174 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 ARHGAP9Q9BRR9 750 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 FEM1BQ9UK73 627 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 GMEB2Q9UKD1 530 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 TRIM64CA6NLI5 447 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 RGL2O15211 777 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 TAF5LO75529 589 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 HSPA1AP0DMV8 641 aaKnown RBP9.25□□□□□ -0.93
SYNE1-206ENST00000367253 HSPA1BP0DMV9 641 aaKnown RBP9.25□□□□□ -0.93
SYNE1-206ENST00000367253 DPEP1P16444 411 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 SP3Q02447 781 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 MTHFSDQ2M296 383 aaKnown RBP9.25□□□□□ -0.93
SYNE1-206ENST00000367253 ZNF697Q5TEC3 545 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 EEPD1Q7L9B9 569 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 APPBP2Q92624 585 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 VCPKMTQ9H867 229 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 NCDNQ9UBB6 729 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 SLC13A4Q9UKG4 626 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 RSPH10B2B2RC85 870 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 SYNCRIPO60506 623 aaKnown RBP9.25□□□□□ -0.93
SYNE1-206ENST00000367253 TTLL1O95922 423 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 RSPH10BP0C881 870 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 ADD2P35612 726 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 STAT3P40763 770 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 RALGDSQ12967 914 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 CUEDC2Q9H467 287 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 HERC5Q9UII4 1024 aaKnown RBP9.25□□□□□ -0.93
SYNE1-206ENST00000367253 MED14O60244 1454 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 RGS16O15492 202 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-206ENST00000367253 LAMC2Q13753 1193 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 TERF2Q15554 542 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 CYP26C1Q6V0L0 522 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 MIGA2Q7L4E1 593 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 PLEKHH3Q7Z736 793 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 STK32CQ86UX6 486 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 ERO1BQ86YB8 467 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 AGBL3Q8NEM8 1001 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 SDCCAG3Q96C92 435 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 CENPKQ9BS16 269 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 QRICH2Q9H0J4 1663 aa9.25□□□□□ -0.93
SYNE1-206ENST00000367253 ARHGAP6O43182 974 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 SPOPO43791 374 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 DIAPH2O60879 1101 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 TOMM70O94826 608 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 ANO1Q5XXA6 986 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 DENND2CQ68D51 928 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 TMC7Q7Z402 723 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 TPH2Q8IWU9 490 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 TTC39CQ8N584 583 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 IQUBQ8NA54 791 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 SSH1Q8WYL5 1049 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 SYMPKQ92797 1274 aaKnown RBP9.24□□□□□ -0.93
SYNE1-206ENST00000367253 ZKSCAN3Q9BRR0 538 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 PARVAQ9NVD7 372 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 SUGT1Q9Y2Z0 365 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 CEP170BQ9Y4F5 1589 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-206ENST00000367253 H7C4K7 107 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 NDUFS2O75306 463 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 SLC4A1P02730 911 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 MLLT1Q03111 559 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-206ENST00000367253 SPP2Q13103 211 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 POLA2Q14181 598 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 SEPT2Q15019 361 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 CEP85Q6P2H3 762 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 RGL4Q8IZJ4 473 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 BEST2Q8NFU1 509 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 ARHGEF1Q92888 912 aaKnown RBP9.24□□□□□ -0.93
SYNE1-206ENST00000367253 MRRFQ96E11 262 aaKnown RBP9.24□□□□□ -0.93
SYNE1-206ENST00000367253 ACAP3Q96P50 834 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 CTTNBP2NLQ9P2B4 639 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 TEKT2Q9UIF3 430 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 PRDM4Q9UKN5 801 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 FLT1P17948 1338 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 ATP10DQ9P241 1426 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 TULP4Q9NRJ4 1543 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 ERN1O75460 977 aaKnown RBP9.24□□□□□ -0.93
SYNE1-206ENST00000367253 HSPD1P10809 573 aaKnown RBP9.24□□□□□ -0.93
SYNE1-206ENST00000367253 GCFC2P16383 781 aaKnown RBP9.24□□□□□ -0.93
SYNE1-206ENST00000367253 ZAP70P43403 619 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 GMPSP49915 693 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-206ENST00000367253 STX17P56962 302 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 PLIN5Q00G26 463 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 SF3A3Q12874 501 aaKnown RBP eCLIP9.24□□□□□ -0.93
SYNE1-206ENST00000367253 PEX6Q13608 980 aa9.24□□□□□ -0.93
SYNE1-206ENST00000367253 IL31Q6EBC2 164 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms