RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 TRIB2Q92519 343 aa20.58■□□□□ 0.89
CLN3-206ENST00000360019 PPP1R9BQ96SB3 815 aa20.58■□□□□ 0.89
CLN3-206ENST00000360019 TRIM5Q9C035 493 aa20.58■□□□□ 0.89
CLN3-206ENST00000360019 XPNPEP1Q9NQW7 623 aa20.58■□□□□ 0.89
CLN3-206ENST00000360019 MYH11P35749 1972 aa20.58■□□□□ 0.88
CLN3-206ENST00000360019 BICDL2A1A5D9 508 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 NMT1P30419 496 aaKnown RBP20.57■□□□□ 0.88
CLN3-206ENST00000360019 CCDC173Q0VFZ6 552 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 KIF22Q14807 665 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 TARBP2Q15633 366 aaKnown RBP20.57■□□□□ 0.88
CLN3-206ENST00000360019 ODR4Q5SWX8 454 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 FAM102BQ5T8I3 360 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 OR6J1Q8NGC5 347 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 SMARCAD1Q9H4L7 1026 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 NRBP2Q9NSY0 501 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 LGALS2P05162 132 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 ZNF75DP51815 510 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 SOX10P56693 466 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 PLCB4Q15147 1175 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 TPD52L1Q16890 204 aaPredicted RBP20.57■□□□□ 0.88
CLN3-206ENST00000360019 FAM178BQ8IXR5 827 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 ATP8B4Q8TF62 1192 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 LENG1Q96BZ8 264 aaPredicted RBP20.57■□□□□ 0.88
CLN3-206ENST00000360019 FAM167AQ96KS9 214 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 DRC1Q96MC2 740 aa20.57■□□□□ 0.88
CLN3-206ENST00000360019 GCNT3O95395 438 aa20.56■□□□□ 0.88
CLN3-206ENST00000360019 MMP3P08254 477 aa20.56■□□□□ 0.88
CLN3-206ENST00000360019 HOXD8P13378 290 aaPredicted RBP20.56■□□□□ 0.88
CLN3-206ENST00000360019 PLS3P13797 630 aa20.56■□□□□ 0.88
CLN3-206ENST00000360019 HOXD13P35453 343 aa20.56■□□□□ 0.88
CLN3-206ENST00000360019 SLC26A2P50443 739 aa20.56■□□□□ 0.88
CLN3-206ENST00000360019 FANCCQ00597 558 aa20.56■□□□□ 0.88
CLN3-206ENST00000360019 ZCWPW2Q504Y3 356 aa20.56■□□□□ 0.88
CLN3-206ENST00000360019 NELFCDQ8IXH7 590 aa20.56■□□□□ 0.88
CLN3-206ENST00000360019 BBXQ8WY36 941 aaPredicted RBP20.56■□□□□ 0.88
CLN3-206ENST00000360019 DHX33Q9H6R0 707 aaKnown RBP20.56■□□□□ 0.88
CLN3-206ENST00000360019 ATP6V0A4Q9HBG4 840 aa20.56■□□□□ 0.88
CLN3-206ENST00000360019 LARSQ9P2J5 1176 aaKnown RBP20.56■□□□□ 0.88
CLN3-206ENST00000360019 PRPF6O94906 941 aaKnown RBP20.55■□□□□ 0.88
CLN3-206ENST00000360019 EMC2Q15006 297 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 BMT2Q1RMZ1 405 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 ZNF720Q7Z2F6 126 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 MCPH1Q8NEM0 835 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 TRPV1Q8NER1 839 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 ZNF507Q8TCN5 953 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 CD99L2Q8TCZ2 262 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 KCTD10Q9H3F6 313 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 ZBTB42B2RXF5 422 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 GPR25O00155 361 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 DYNC1LI2O43237 492 aaPredicted RBP20.55■□□□□ 0.88
CLN3-206ENST00000360019 PPFIA4O75335 1185 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 KIF20AO95235 890 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 POLGP54098 1239 aaPredicted RBP20.55■□□□□ 0.88
CLN3-206ENST00000360019 LRRC63Q05C16 580 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 KCNA1Q09470 495 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 ZC2HC1CQ53FD0 456 aaPredicted RBP20.55■□□□□ 0.88
CLN3-206ENST00000360019 IRF2BP1Q8IU81 584 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 CSGALNACT2Q8N6G5 542 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 C16orf70Q9BSU1 422 aa20.55■□□□□ 0.88
CLN3-206ENST00000360019 CASP8AP2Q9UKL3 1982 aa20.54■□□□□ 0.88
CLN3-206ENST00000360019 EIF3DO15371 548 aaKnown RBP eCLIP20.54■□□□□ 0.88
CLN3-206ENST00000360019 ZNF286BP0CG31 522 aa20.54■□□□□ 0.88
CLN3-206ENST00000360019 FOXR2Q6PJQ5 311 aa20.54■□□□□ 0.88
CLN3-206ENST00000360019 APTXQ7Z2E3 356 aaKnown RBP20.54■□□□□ 0.88
CLN3-206ENST00000360019 TLK2Q86UE8 772 aa20.54■□□□□ 0.88
CLN3-206ENST00000360019 KIFAP3Q92845 792 aa20.54■□□□□ 0.88
CLN3-206ENST00000360019 EEF2KMTQ96G04 330 aa20.54■□□□□ 0.88
CLN3-206ENST00000360019 STRA6Q9BX79 667 aa20.54■□□□□ 0.88
CLN3-206ENST00000360019 SRRTQ9BXP5 876 aaKnown RBP20.54■□□□□ 0.88
CLN3-206ENST00000360019 RNPEPQ9H4A4 650 aa20.54■□□□□ 0.88
CLN3-206ENST00000360019 ERAP1Q9NZ08 941 aa20.54■□□□□ 0.88
CLN3-206ENST00000360019 IFNKQ9P0W0 207 aa20.54■□□□□ 0.88
CLN3-206ENST00000360019 FAM184BQ9ULE4 1060 aa20.54■□□□□ 0.88
CLN3-206ENST00000360019 PPP1R37O75864 691 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 MAPTP10636 758 aaKnown RBP20.53■□□□□ 0.88
CLN3-206ENST00000360019 CYBAP13498 195 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 CDK11BP21127 795 aaKnown RBP20.53■□□□□ 0.88
CLN3-206ENST00000360019 RFC5P40937 340 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 PEX3P56589 373 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 KNOP1Q1ED39 458 aaKnown RBP20.53■□□□□ 0.88
CLN3-206ENST00000360019 BSNDQ8WZ55 320 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 XPO4Q9C0E2 1151 aaKnown RBP20.53■□□□□ 0.88
CLN3-206ENST00000360019 THAP9Q9H5L6 903 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 NRBP1Q9UHY1 535 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 A6NJR5 290 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 K7ENM7 598 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 SERPINC1P01008 464 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 IRX5P78411 483 aaPredicted RBP20.53■□□□□ 0.88
CLN3-206ENST00000360019 TRIM32Q13049 653 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 MFSD14CQ5VZR4 134 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 KSR1Q8IVT5 923 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 SLC7A3Q8WY07 619 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 MRFAP1L1Q96HT8 127 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 SRRDQ9UH36 339 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 TRPC6Q9Y210 931 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 PPME1Q9Y570 386 aa20.53■□□□□ 0.88
CLN3-206ENST00000360019 ZMYM2Q9UBW7 1377 aa20.52■□□□□ 0.88
CLN3-206ENST00000360019 MAFO75444 373 aaPredicted RBP20.52■□□□□ 0.88
CLN3-206ENST00000360019 NCKAP1LP55160 1127 aa20.52■□□□□ 0.88
CLN3-206ENST00000360019 DGKDQ16760 1214 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms